Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPF83_RS02830 Genome accession   NZ_CP094078
Coordinates   588107..588658 (+) Length   183 a.a.
NCBI ID   WP_220836797.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 583107..593658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF83_RS02815 (MPF83_02815) cysS 583287..584684 (-) 1398 WP_245054606.1 cysteine--tRNA ligase -
  MPF83_RS02820 (MPF83_02820) murJ 584685..586145 (-) 1461 WP_245054608.1 murein biosynthesis integral membrane protein MurJ -
  MPF83_RS02825 (MPF83_02825) - 586238..588082 (+) 1845 WP_245054610.1 FapA family protein -
  MPF83_RS02830 (MPF83_02830) ruvA 588107..588658 (+) 552 WP_220836797.1 Holliday junction branch migration protein RuvA Machinery gene
  MPF83_RS02835 (MPF83_02835) - 588982..589176 (+) 195 WP_245054830.1 hypothetical protein -
  MPF83_RS02840 (MPF83_02840) - 589191..591347 (+) 2157 WP_245054832.1 DUF3519 domain-containing protein -
  MPF83_RS02845 (MPF83_02845) - 591432..591761 (+) 330 Protein_544 hypothetical protein -
  MPF83_RS02850 (MPF83_02850) - 591829..592965 (-) 1137 WP_245054614.1 NAD-binding protein -
  MPF83_RS02855 (MPF83_02855) rpmB 593116..593304 (-) 189 WP_058338995.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20146.76 Da        Isoelectric Point: 9.4311

>NTDB_id=574189 MPF83_RS02830 WP_220836797.1 588107..588658(+) (ruvA) [Helicobacter pylori strain Hpfe101]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQVGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETGPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=574189 MPF83_RS02830 WP_220836797.1 588107..588658(+) (ruvA) [Helicobacter pylori strain Hpfe101]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGTGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTGGCCCTGCGCGCAATGAAGTCTTCTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(139-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Streptococcus pneumoniae R6

34.872

100

0.372
  ruvA Streptococcus pneumoniae D39

34.872

100

0.372
  ruvA Streptococcus pneumoniae TIGR4

34.359

100

0.366
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361