Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPF83_RS01525 Genome accession   NZ_CP094078
Coordinates   295800..296849 (-) Length   349 a.a.
NCBI ID   WP_245054311.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe101     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 290800..301849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF83_RS01505 (MPF83_01505) rpsL 291765..292172 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPF83_RS01510 (MPF83_01510) rpsG 292188..292655 (+) 468 WP_015086161.1 30S ribosomal protein S7 -
  MPF83_RS01515 (MPF83_01515) fusA 292667..294745 (+) 2079 WP_120937362.1 elongation factor G -
  MPF83_RS01520 (MPF83_01520) - 295196..295402 (-) 207 WP_245054309.1 hypothetical protein -
  MPF83_RS01525 (MPF83_01525) waaF 295800..296849 (-) 1050 WP_245054311.1 lipopolysaccharide heptosyltransferase II Regulator
  MPF83_RS01530 (MPF83_01530) hisS 296911..298239 (+) 1329 WP_245054313.1 histidine--tRNA ligase -
  MPF83_RS01535 (MPF83_01535) asd 298226..299266 (+) 1041 WP_245054315.1 aspartate-semialdehyde dehydrogenase -
  MPF83_RS01540 (MPF83_01540) - 299698..300825 (+) 1128 WP_245054317.1 DUF874 family protein -
  MPF83_RS01545 (MPF83_01545) - 301054..301798 (-) 745 Protein_299 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39559.46 Da        Isoelectric Point: 9.8454

>NTDB_id=574185 MPF83_RS01525 WP_245054311.1 295800..296849(-) (waaF) [Helicobacter pylori strain Hpfe101]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWLASHYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574185 MPF83_RS01525 WP_245054311.1 295800..296849(-) (waaF) [Helicobacter pylori strain Hpfe101]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCGCAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGTCATGCGATAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCTAGCTTCTCATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367