Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A7A18_RS22785 Genome accession   NZ_CP076262
Coordinates   4646223..4646759 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 0-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4641223..4651759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A18_RS22765 (A7A18_22690) aphA 4641512..4642225 (+) 714 WP_001226928.1 acid phosphatase AphA -
  A7A18_RS22770 (A7A18_22695) yjbQ 4642336..4642752 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A7A18_RS22775 (A7A18_22700) yjbR 4642756..4643112 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  A7A18_RS22780 (A7A18_22705) uvrA 4643147..4645969 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  A7A18_RS22785 (A7A18_22710) ssb 4646223..4646759 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A7A18_RS22790 (A7A18_22715) yjcB 4646858..4647139 (-) 282 WP_001295689.1 YjcB family protein -
  A7A18_RS22795 (A7A18_22720) pdeC 4647569..4649155 (+) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  A7A18_RS22800 (A7A18_22725) soxS 4649158..4649481 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  A7A18_RS22805 (A7A18_22730) soxR 4649567..4650031 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=574185 A7A18_RS22785 WP_000168305.1 4646223..4646759(+) (ssb) [Escherichia coli strain 0-4]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=574185 A7A18_RS22785 WP_000168305.1 4646223..4646759(+) (ssb) [Escherichia coli strain 0-4]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489