Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HPATCC43504_RS06760 Genome accession   NZ_AP017632
Coordinates   1416746..1417756 (+) Length   336 a.a.
NCBI ID   WP_000664529.1    Uniprot ID   Q1CUB7
Organism   Helicobacter pylori strain ATCC 43504     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1411746..1422756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPATCC43504_RS06735 (HPATCC43504_01349) - 1411930..1413252 (-) 1323 WP_162296888.1 M23 family metallopeptidase -
  HPATCC43504_RS06740 (HPATCC43504_01350) - 1413262..1414206 (-) 945 WP_108169221.1 outer membrane beta-barrel protein -
  HPATCC43504_RS06745 (HPATCC43504_01351) - 1414215..1415072 (-) 858 WP_108169222.1 outer membrane beta-barrel protein -
  HPATCC43504_RS06750 (HPATCC43504_01352) - 1415062..1415784 (-) 723 WP_000523298.1 hypothetical protein -
  HPATCC43504_RS06755 (HPATCC43504_01353) panB 1415933..1416745 (+) 813 WP_108169223.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HPATCC43504_RS06760 (HPATCC43504_01354) ruvB 1416746..1417756 (+) 1011 WP_000664529.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HPATCC43504_RS06765 (HPATCC43504_01355) tatB 1417824..1418306 (+) 483 WP_108169224.1 Sec-independent protein translocase protein TatB -
  HPATCC43504_RS06770 (HPATCC43504_01356) tatC 1418299..1419033 (+) 735 WP_079340971.1 twin-arginine translocase subunit TatC -
  HPATCC43504_RS06775 (HPATCC43504_01357) queA 1419034..1420071 (+) 1038 WP_108169225.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HPATCC43504_RS06780 (HPATCC43504_01358) rsmG 1420068..1420604 (+) 537 WP_001068845.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HPATCC43504_RS06785 (HPATCC43504_01359) - 1420598..1420840 (+) 243 WP_000944406.1 PP0621 family protein -
  HPATCC43504_RS06790 (HPATCC43504_01360) - 1420843..1421250 (+) 408 WP_108169226.1 hypothetical protein -
  HPATCC43504_RS06800 (HPATCC43504_01361) - 1421383..1421985 (-) 603 WP_000291636.1 outer membrane protein -
  HPATCC43504_RS06805 (HPATCC43504_01362) - 1422275..1422649 (+) 375 WP_000772151.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37310.36 Da        Isoelectric Point: 6.3684

>NTDB_id=57414 HPATCC43504_RS06760 WP_000664529.1 1416746..1417756(+) (ruvB) [Helicobacter pylori strain ATCC 43504]
MKERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=57414 HPATCC43504_RS06760 WP_000664529.1 1416746..1417756(+) (ruvB) [Helicobacter pylori strain ATCC 43504]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCCTTGAATGAATTGGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1CUB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.619

100

0.976
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.56

96.131

0.515
  ruvB Streptococcus pneumoniae TIGR4

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae R6

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae D39

50.464

96.131

0.485
  ruvB Synechocystis sp. PCC 6803

52.475

90.179

0.473

Multiple sequence alignment