Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG46_RS02895 Genome accession   NZ_CP094066
Coordinates   595908..596459 (+) Length   183 a.a.
NCBI ID   WP_245014662.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 590908..601459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG46_RS02880 (MPG46_02880) cysS 591087..592484 (-) 1398 WP_245014659.1 cysteine--tRNA ligase -
  MPG46_RS02885 (MPG46_02885) murJ 592485..593945 (-) 1461 WP_245014660.1 murein biosynthesis integral membrane protein MurJ -
  MPG46_RS02890 (MPG46_02890) - 594038..595882 (+) 1845 WP_245014661.1 FapA family protein -
  MPG46_RS02895 (MPG46_02895) ruvA 595908..596459 (+) 552 WP_245014662.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG46_RS02900 (MPG46_02900) - 596510..596854 (+) 345 Protein_554 DUF3519 domain-containing protein -
  MPG46_RS02905 (MPG46_02905) - 597022..597165 (+) 144 WP_165534031.1 hypothetical protein -
  MPG46_RS02910 (MPG46_02910) - 597158..597328 (+) 171 WP_245014663.1 hypothetical protein -
  MPG46_RS02915 (MPG46_02915) - 597490..598221 (-) 732 WP_245014664.1 NYN domain-containing protein -
  MPG46_RS02920 (MPG46_02920) ruvC 598354..598836 (+) 483 WP_140471420.1 crossover junction endodeoxyribonuclease RuvC -
  MPG46_RS02925 (MPG46_02925) - 598848..601223 (-) 2376 WP_245014665.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20162.76 Da        Isoelectric Point: 9.4311

>NTDB_id=573901 MPG46_RS02895 WP_245014662.1 595908..596459(+) (ruvA) [Helicobacter pylori strain Hpfe110]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=573901 MPG46_RS02895 WP_245014662.1 595908..596459(+) (ruvA) [Helicobacter pylori strain Hpfe110]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACGGCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACCAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCGTTCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(139-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

94.536

100

0.945
  ruvA Streptococcus pneumoniae TIGR4

34.359

100

0.366
  ruvA Streptococcus pneumoniae R6

34.359

100

0.366
  ruvA Streptococcus pneumoniae D39

34.359

100

0.366
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361