Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   XAC29_RS39285 Genome accession   NC_020800
Coordinates   3823344..3823463 (-) Length   39 a.a.
NCBI ID   WP_005915819.1    Uniprot ID   A0A7S6YV99
Organism   Xanthomonas axonopodis Xac29-1     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3799605..3823463 3823344..3823463 within 0


Gene organization within MGE regions


Location: 3799605..3823463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XAC29_RS39185 (XAC29_16405) - 3799605..3799934 (-) 330 WP_005918642.1 hypothetical protein -
  XAC29_RS39190 (XAC29_16410) - 3800081..3800680 (+) 600 WP_015462601.1 hypothetical protein -
  XAC29_RS39195 (XAC29_16415) - 3801007..3801456 (+) 450 WP_015462602.1 hypothetical protein -
  XAC29_RS39200 (XAC29_16420) - 3801453..3802058 (+) 606 WP_011052963.1 M48 family metalloprotease -
  XAC29_RS39205 (XAC29_16425) - 3802055..3802549 (+) 495 Protein_3244 hypothetical protein -
  XAC29_RS47005 - 3802677..3803021 (-) 345 WP_075150220.1 hypothetical protein -
  XAC29_RS39210 (XAC29_16430) - 3803064..3804341 (-) 1278 WP_011052966.1 lytic murein transglycosylase -
  XAC29_RS39215 (XAC29_16435) - 3804474..3807464 (-) 2991 WP_011052967.1 Tn3-like element TnXax1 family transposase -
  XAC29_RS39220 (XAC29_16440) - 3807472..3808746 (-) 1275 WP_011052968.1 tyrosine-type recombinase/integrase -
  XAC29_RS39225 (XAC29_16445) - 3808938..3809993 (+) 1056 WP_015462603.1 DNA-binding protein -
  XAC29_RS39230 xopE 3810126..3811202 (+) 1077 WP_041470856.1 XopE/AvrPphe family type III secretion system effector -
  XAC29_RS39235 (XAC29_16455) - 3811533..3812614 (+) 1082 Protein_3251 DNA-binding protein -
  XAC29_RS39240 (XAC29_16460) xopAI 3812748..3813638 (+) 891 WP_011052119.1 type III secretion system effector XopAI -
  XAC29_RS39245 (XAC29_16465) - 3814058..3814864 (-) 807 WP_015463520.1 hypothetical protein -
  XAC29_RS39250 (XAC29_16470) - 3814969..3815253 (+) 285 WP_016849322.1 hypothetical protein -
  XAC29_RS39255 (XAC29_16475) - 3815481..3816596 (+) 1116 WP_011052122.1 IS1595 family transposase -
  XAC29_RS48735 - 3816551..3817066 (-) 516 WP_011052123.1 hypothetical protein -
  XAC29_RS39260 (XAC29_16480) sucD 3817153..3818028 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  XAC29_RS39265 (XAC29_16485) sucC 3818053..3819222 (-) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  XAC29_RS39270 (XAC29_16490) - 3819454..3821067 (+) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  XAC29_RS39275 (XAC29_16495) pilR 3821392..3822786 (+) 1395 WP_015463522.1 sigma-54 dependent transcriptional regulator Regulator
  XAC29_RS39280 (XAC29_16500) - 3823045..3823212 (-) 168 WP_015463523.1 hypothetical protein -
  XAC29_RS39285 (XAC29_16505) pilB 3823344..3823463 (-) 120 WP_005915819.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4178.84 Da        Isoelectric Point: 9.0113

>NTDB_id=57354 XAC29_RS39285 WP_005915819.1 3823344..3823463(-) (pilB) [Xanthomonas axonopodis Xac29-1]
MQIAEAAQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=57354 XAC29_RS39285 WP_005915819.1 3823344..3823463(-) (pilB) [Xanthomonas axonopodis Xac29-1]
ATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATTCGCGATTTGCGCCAGTCGGCGTTGATGAAAGCTGCGCACGGGGT
GACCAGCCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6YV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

51.282

100

0.513
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Vibrio cholerae strain A1552

45.714

89.744

0.41
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385

Multiple sequence alignment