Detailed information NTG0057353

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: XAC29_RS39275
• Genome accession: NC_020800
• Coordinates: 3821392..3822786 (+)
• Length: 464 a.a.
• NCBI ID: WP_015463522.1
• Uniprot ID: A0A7S6YVA4
• Organism: Xanthomonas axonopodis Xac29-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3799605..3823463	3821392..3822786	within	0

Gene organization within MGE regions

Location: 3799605..3823463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XAC29_RS39185 (XAC29_16405)	-	3799605..3799934 (-)	330	WP_005918642.1	hypothetical protein	-
XAC29_RS39190 (XAC29_16410)	-	3800081..3800680 (+)	600	WP_015462601.1	hypothetical protein	-
XAC29_RS39195 (XAC29_16415)	-	3801007..3801456 (+)	450	WP_015462602.1	hypothetical protein	-
XAC29_RS39200 (XAC29_16420)	-	3801453..3802058 (+)	606	WP_011052963.1	M48 family metalloprotease	-
XAC29_RS39205 (XAC29_16425)	-	3802055..3802549 (+)	495	Protein_3244	hypothetical protein	-
XAC29_RS47005	-	3802677..3803021 (-)	345	WP_075150220.1	hypothetical protein	-
XAC29_RS39210 (XAC29_16430)	-	3803064..3804341 (-)	1278	WP_011052966.1	lytic murein transglycosylase	-
XAC29_RS39215 (XAC29_16435)	-	3804474..3807464 (-)	2991	WP_011052967.1	Tn3-like element TnXax1 family transposase	-
XAC29_RS39220 (XAC29_16440)	-	3807472..3808746 (-)	1275	WP_011052968.1	tyrosine-type recombinase/integrase	-
XAC29_RS39225 (XAC29_16445)	-	3808938..3809993 (+)	1056	WP_015462603.1	DNA-binding protein	-
XAC29_RS39230	xopE	3810126..3811202 (+)	1077	WP_041470856.1	XopE/AvrPphe family type III secretion system effector	-
XAC29_RS39235 (XAC29_16455)	-	3811533..3812614 (+)	1082	Protein_3251	DNA-binding protein	-
XAC29_RS39240 (XAC29_16460)	xopAI	3812748..3813638 (+)	891	WP_011052119.1	type III secretion system effector XopAI	-
XAC29_RS39245 (XAC29_16465)	-	3814058..3814864 (-)	807	WP_015463520.1	hypothetical protein	-
XAC29_RS39250 (XAC29_16470)	-	3814969..3815253 (+)	285	WP_016849322.1	hypothetical protein	-
XAC29_RS39255 (XAC29_16475)	-	3815481..3816596 (+)	1116	WP_011052122.1	IS1595 family transposase	-
XAC29_RS48735	-	3816551..3817066 (-)	516	WP_011052123.1	hypothetical protein	-
XAC29_RS39260 (XAC29_16480)	sucD	3817153..3818028 (-)	876	WP_005921370.1	succinate--CoA ligase subunit alpha	-
XAC29_RS39265 (XAC29_16485)	sucC	3818053..3819222 (-)	1170	WP_005915812.1	ADP-forming succinate--CoA ligase subunit beta	-
XAC29_RS39270 (XAC29_16490)	-	3819454..3821067 (+)	1614	WP_003488599.1	HAMP domain-containing sensor histidine kinase	-
XAC29_RS39275 (XAC29_16495)	pilR	3821392..3822786 (+)	1395	WP_015463522.1	sigma-54 dependent transcriptional regulator	Regulator
XAC29_RS39280 (XAC29_16500)	-	3823045..3823212 (-)	168	WP_015463523.1	hypothetical protein	-
XAC29_RS39285 (XAC29_16505)	pilB	3823344..3823463 (-)	120	WP_005915819.1	hypothetical protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50105.56 Da
• Isoelectric Point: 6.6973

>NTDB_id=57353 XAC29_RS39275 WP_015463522.1 3821392..3822786(+) (pilR) [Xanthomonas axonopodis Xac29-1]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELGNILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=57353 XAC29_RS39275 WP_015463522.1 3821392..3822786(+) (pilR) [Xanthomonas axonopodis Xac29-1]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGGAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

3D structure

• AlphaFold DB: A0A7S6YVA4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.851	99.784	0.627
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491