Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   D16iCDA_RS08310 Genome accession   NZ_CP076114
Coordinates   1782592..1783929 (+) Length   445 a.a.
NCBI ID   WP_070880615.1    Uniprot ID   -
Organism   Phytopseudomonas seleniipraecipitans strain D1-6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777592..1788929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D16iCDA_RS08285 (D16iCDA_08285) pgeF 1777751..1778491 (-) 741 WP_070880619.1 peptidoglycan editing factor PgeF -
  D16iCDA_RS08290 (D16iCDA_08290) rluD 1778488..1779462 (-) 975 WP_070880797.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D16iCDA_RS08295 (D16iCDA_08295) - 1779610..1780599 (+) 990 WP_070880618.1 outer membrane protein assembly factor BamD -
  D16iCDA_RS08300 (D16iCDA_08300) - 1780763..1781005 (+) 243 WP_070880617.1 PP0621 family protein -
  D16iCDA_RS08305 (D16iCDA_08305) pilS 1780995..1782587 (+) 1593 WP_070880616.1 sensor histidine kinase Regulator
  D16iCDA_RS08310 (D16iCDA_08310) pilR 1782592..1783929 (+) 1338 WP_070880615.1 sigma-54-dependent transcriptional regulator Regulator
  D16iCDA_RS08315 (D16iCDA_08315) - 1784018..1785079 (-) 1062 WP_070880796.1 FAD-dependent oxidoreductase -
  D16iCDA_RS08320 (D16iCDA_08320) - 1785225..1785716 (+) 492 WP_070880795.1 GspH/FimT family pseudopilin -
  D16iCDA_RS21145 (D16iCDA_08325) - 1785819..1786331 (+) 513 WP_070880614.1 GspH/FimT family pseudopilin -
  D16iCDA_RS08335 (D16iCDA_08330) pilV 1786345..1786911 (+) 567 WP_070880613.1 type IV pilus modification protein PilV -
  D16iCDA_RS08340 (D16iCDA_08335) - 1786908..1787756 (+) 849 WP_070880612.1 PilW family protein -
  D16iCDA_RS08345 (D16iCDA_08340) - 1787753..1788397 (+) 645 WP_070880611.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49605.06 Da        Isoelectric Point: 6.1182

>NTDB_id=571979 D16iCDA_RS08310 WP_070880615.1 1782592..1783929(+) (pilR) [Phytopseudomonas seleniipraecipitans strain D1-6]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGTGLEIVQHIQQRYPQTPVAM
ITAFGSVDTAINALKAGAFDFLTKPVDLGRLRELVVTALRLGVSDEESSPGASRLLGESPPMRALRGQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRRERAFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGSLFLDEVADLP
LTMQVKLLRAIQEKAIRTVGGQQEVVVDTRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADVM
LKRLNEGIGLPPVKLDGPAMDKLKSYRFPGNVRELENMLERAYTLCEGDVICAHDLRLADAAPAGENGDASLAQIDNIED
YLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=571979 D16iCDA_RS08310 WP_070880615.1 1782592..1783929(+) (pilR) [Phytopseudomonas seleniipraecipitans strain D1-6]
ATGAATCGCCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAACTGCTGGAGATCACCCTCGGGCGCATGAA
GCTCGACACGCGCAGCGCGCGCAACGTCAAGGAAGCACGCGAATGGCTGGCCAAGGAGCCGTTCGACCTGTGCCTTACCG
ATATGCGCCTGCCGGACGGCACCGGCCTTGAGATCGTGCAGCATATCCAGCAGCGCTACCCGCAGACGCCGGTAGCAATG
ATCACCGCTTTCGGCAGCGTTGACACGGCGATCAATGCACTCAAGGCCGGCGCCTTCGACTTTCTCACCAAACCAGTCGA
TCTCGGCCGCCTGCGTGAGCTGGTGGTTACCGCCCTGCGCCTGGGCGTGAGCGACGAGGAAAGCTCGCCAGGCGCAAGTC
GCCTGCTGGGTGAGTCACCACCGATGCGCGCCTTGCGTGGGCAGATTCAGAAGTTGGCGCGCAGTCAGGCGCCGGTCTAT
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTCGCCCGGCTGATCCATGAACAGGGGCCGCGCCGCGAGCGCGCCTT
CGTGCCGGTCAACTGCGGCGCCATTCCATCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GTGCCATCGAAGACAAGCAGGGCCTGTTCCAGGCAGCCAATGGCGGTAGCCTTTTTCTCGACGAAGTGGCCGACCTGCCG
CTGACCATGCAGGTCAAACTGCTACGCGCGATTCAGGAAAAAGCCATCCGCACCGTCGGGGGCCAACAGGAAGTGGTAGT
CGATACGCGCATTCTCTGCGCCACCCACAAGGATCTCGCCGCCGAGGTAGCCGCCGGGCGCTTCCGTCAGGATCTGTATT
ACCGCCTCAACGTCATCGAACTGCGCGTGCCACCGCTGCGCGAACGCCGCGAGGATATCCCGCTACTCGCCGACGTGATG
CTCAAGCGCCTCAACGAAGGCATCGGCCTGCCGCCGGTCAAGCTCGACGGCCCGGCCATGGATAAGCTCAAGAGCTACCG
TTTTCCCGGCAACGTGCGTGAATTGGAGAATATGCTGGAGCGCGCCTACACCCTGTGCGAGGGGGATGTTATTTGCGCTC
ACGATCTGCGCTTGGCCGATGCCGCGCCCGCTGGCGAAAATGGCGATGCCAGCCTGGCGCAGATCGACAACATCGAGGAC
TACCTCGAAGACGTCGAGCGCAAACTGATCATGCAGGCCCTCGAAGAAACCCGCTGGAACCGCACCGCCGCGGCGCAGCG
CCTGGGCCTGAGCTTCCGCTCGATGCGCTATCGACTGAAGAAGTTGGGAATCGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.169

100

0.852
  pilR Acinetobacter baumannii strain A118

49.782

100

0.512
  luxO Vibrio cholerae strain A1552

36.771

100

0.369