Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KMZ33_RS10630 Genome accession   NZ_CP076113
Coordinates   2223665..2224120 (-) Length   151 a.a.
NCBI ID   WP_241951475.1    Uniprot ID   -
Organism   Pasteurella multocida strain GS2020-X2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2218665..2229120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ33_RS10580 rdgC 2219122..2220024 (-) 903 WP_241951468.1 recombination-associated protein RdgC -
  KMZ33_RS10585 - 2220055..2220264 (-) 210 WP_160531376.1 hypothetical protein -
  KMZ33_RS10590 - 2220341..2220652 (-) 312 WP_241951469.1 DUF6378 domain-containing protein -
  KMZ33_RS10595 - 2220649..2220807 (-) 159 WP_241951470.1 hypothetical protein -
  KMZ33_RS10600 - 2220804..2221280 (-) 477 WP_241951471.1 MazG-like family protein -
  KMZ33_RS10605 - 2221283..2221651 (-) 369 WP_241951472.1 hypothetical protein -
  KMZ33_RS10610 - 2221654..2221881 (-) 228 WP_241951473.1 DUF3083 family protein -
  KMZ33_RS10615 - 2221891..2222166 (-) 276 WP_241951474.1 hypothetical protein -
  KMZ33_RS10620 - 2222176..2222439 (-) 264 WP_078836127.1 hypothetical protein -
  KMZ33_RS10625 - 2222489..2223394 (-) 906 WP_064702815.1 prohibitin family protein -
  KMZ33_RS10630 ssb 2223665..2224120 (-) 456 WP_241951475.1 single-stranded DNA-binding protein Machinery gene
  KMZ33_RS10635 - 2224124..2224735 (-) 612 WP_241951476.1 YqaJ viral recombinase family protein -
  KMZ33_RS10640 bet 2224728..2225513 (-) 786 WP_241951477.1 phage recombination protein Bet -
  KMZ33_RS10645 - 2225517..2226500 (-) 984 WP_241951478.1 hypothetical protein -
  KMZ33_RS10650 - 2226503..2226664 (-) 162 WP_241951479.1 hypothetical protein -
  KMZ33_RS10655 - 2226678..2226905 (-) 228 WP_111759095.1 hypothetical protein -
  KMZ33_RS10660 - 2226892..2227173 (-) 282 WP_241951480.1 hypothetical protein -
  KMZ33_RS10665 - 2227218..2227859 (-) 642 WP_241951481.1 DUF3560 domain-containing protein -
  KMZ33_RS10685 - 2228645..2228872 (-) 228 WP_241951482.1 hypothetical protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 17048.88 Da        Isoelectric Point: 7.9779

>NTDB_id=571964 KMZ33_RS10630 WP_241951475.1 2223665..2224120(-) (ssb) [Pasteurella multocida strain GS2020-X2]
MAGVNRVIILGNLGNDPEIRTMPNGDAVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQAPQNNAYANAKSGKPVQQQTNNFEEDNIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=571964 KMZ33_RS10630 WP_241951475.1 2223665..2224120(-) (ssb) [Pasteurella multocida strain GS2020-X2]
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAACGATCCTGAAATCCGCACCATGCCAAATGGCGACGC
AGTGGCAAAAATCAGCGTCGCAACCAGTGAGAGCTGGATAGACAAAAACACTGGCGAACGTAAAACACAAACTGAATGGC
ACTCTATCGTGTTCTATCGCAGACAAGCAGAAATTTGCGGTCAGTATTTGAAAAAAGGCTCGAAAGTGTATGTTGAAGGC
CGTCTAAAAACTCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACAACAGAAATTCAAGGTGATGTATTACAGAT
GTTAGACAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTCCACAGAATAACGCTTATGCGAATGCGAAAAGCG
GAAAGCCAGTACAGCAACAAACAAATAACTTTGAAGAGGATAATATCCCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

61.326

100

0.735
  ssb Vibrio cholerae strain A1552

54.286

92.715

0.503
  ssb Neisseria gonorrhoeae MS11

46.377

91.391

0.424
  ssb Neisseria meningitidis MC58

46.377

91.391

0.424