Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KMZ33_RS07455 Genome accession   NZ_CP076113
Coordinates   1572364..1572864 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain GS2020-X2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1567364..1577864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ33_RS07440 rlmB 1567907..1568644 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KMZ33_RS07445 sodC 1568730..1569290 (-) 561 WP_241951160.1 superoxide dismutase [Cu-Zn] SodC -
  KMZ33_RS07450 uvrA 1569361..1572192 (-) 2832 WP_241951161.1 excinuclease ABC subunit UvrA -
  KMZ33_RS07455 ssb 1572364..1572864 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  KMZ33_RS07460 - 1572977..1574110 (-) 1134 WP_241951162.1 patatin-like phospholipase family protein -
  KMZ33_RS07465 folD 1574238..1575092 (-) 855 WP_241951163.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  KMZ33_RS07480 - 1575735..1576154 (+) 420 WP_241951164.1 DUF417 family protein -
  KMZ33_RS07485 lipA 1576232..1577194 (-) 963 WP_005719422.1 lipoyl synthase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=571955 KMZ33_RS07455 WP_005725039.1 1572364..1572864(+) (ssb) [Pasteurella multocida strain GS2020-X2]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=571955 KMZ33_RS07455 WP_005725039.1 1572364..1572864(+) (ssb) [Pasteurella multocida strain GS2020-X2]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACCACTGAAATTCAAGGCGACGTGTTACAGAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCACCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCCCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47