Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABD1_RS15800 | Genome accession | NC_020547 |
| Coordinates | 3335783..3336232 (-) | Length | 149 a.a. |
| NCBI ID | WP_000993719.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii D1279779 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3330783..3341232
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABD1_RS15775 (ABD1_30610) | - | 3331148..3331531 (+) | 384 | WP_000090000.1 | RidA family protein | - |
| ABD1_RS15780 (ABD1_30620) | - | 3331741..3331935 (+) | 195 | WP_000289091.1 | bacterioferritin-associated ferredoxin | - |
| ABD1_RS15785 (ABD1_30630) | bfr | 3332180..3332644 (+) | 465 | WP_000678121.1 | heteropolymeric bacterioferritin subunit Bfr | - |
| ABD1_RS15790 (ABD1_30640) | - | 3332686..3334314 (-) | 1629 | WP_015451633.1 | PglL family O-oligosaccharyltransferase | - |
| ABD1_RS15795 (ABD1_30650) | - | 3334422..3335732 (-) | 1311 | WP_000914625.1 | O-antigen ligase family protein | - |
| ABD1_RS15800 (ABD1_30660) | pilA | 3335783..3336232 (-) | 450 | WP_000993719.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ABD1_RS15805 (ABD1_30670) | - | 3336574..3337134 (-) | 561 | WP_000258949.1 | TPM domain-containing protein | - |
| ABD1_RS15810 (ABD1_30680) | - | 3337128..3338210 (-) | 1083 | WP_001246384.1 | TPM domain-containing protein | - |
| ABD1_RS15815 (ABD1_30690) | - | 3338232..3338822 (-) | 591 | WP_000846931.1 | LemA family protein | - |
| ABD1_RS15820 (ABD1_30700) | - | 3338954..3339841 (-) | 888 | WP_001017323.1 | metal-dependent hydrolase | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15166.27 Da Isoelectric Point: 8.4527
>NTDB_id=57166 ABD1_RS15800 WP_000993719.1 3335783..3336232(-) (pilA) [Acinetobacter baumannii D1279779]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQSYIAKSQASEAFTLADGLKTTIATNLQAGTCFANGSAAATATDSVTGKY
GKAEILADTTSGSNGCGIKYTFNPSNVSAKLKNGVIGIAVSENGVLKKSTVTATTSTLNEYLPQSFSGS
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQSYIAKSQASEAFTLADGLKTTIATNLQAGTCFANGSAAATATDSVTGKY
GKAEILADTTSGSNGCGIKYTFNPSNVSAKLKNGVIGIAVSENGVLKKSTVTATTSTLNEYLPQSFSGS
Nucleotide
Download Length: 450 bp
>NTDB_id=57166 ABD1_RS15800 WP_000993719.1 3335783..3336232(-) (pilA) [Acinetobacter baumannii D1279779]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTTATGATCGTGGTTGCCATTATCGGTATTTTGGCGGCAATTGCGAT
TCCTGCTTATCAGAGTTATATTGCAAAATCTCAAGCTTCTGAAGCATTTACATTAGCAGATGGTCTAAAAACAACTATTG
CTACTAACTTGCAAGCTGGTACATGTTTCGCTAATGGTTCAGCTGCAGCAACAGCAACTGACTCAGTTACGGGTAAATAT
GGTAAAGCAGAAATTTTAGCAGATACAACGTCTGGTAGTAATGGATGTGGGATTAAATATACATTTAATCCATCAAATGT
ATCTGCTAAGTTGAAAAACGGAGTTATTGGTATTGCTGTAAGTGAAAATGGTGTATTGAAAAAATCTACAGTAACAGCGA
CAACTTCTACATTAAATGAATATTTACCACAATCTTTCTCTGGTTCTTAA
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTTATGATCGTGGTTGCCATTATCGGTATTTTGGCGGCAATTGCGAT
TCCTGCTTATCAGAGTTATATTGCAAAATCTCAAGCTTCTGAAGCATTTACATTAGCAGATGGTCTAAAAACAACTATTG
CTACTAACTTGCAAGCTGGTACATGTTTCGCTAATGGTTCAGCTGCAGCAACAGCAACTGACTCAGTTACGGGTAAATAT
GGTAAAGCAGAAATTTTAGCAGATACAACGTCTGGTAGTAATGGATGTGGGATTAAATATACATTTAATCCATCAAATGT
ATCTGCTAAGTTGAAAAACGGAGTTATTGGTATTGCTGTAAGTGAAAATGGTGTATTGAAAAAATCTACAGTAACAGCGA
CAACTTCTACATTAAATGAATATTTACCACAATCTTTCTCTGGTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter nosocomialis M2 |
67.785 |
100 |
0.678 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.333 |
100 |
0.396 |
| pilA | Vibrio cholerae strain A1552 |
39.333 |
100 |
0.396 |
| pilA | Vibrio cholerae C6706 |
39.333 |
100 |
0.396 |