Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R2APBS1_RS03160 Genome accession   NC_020541
Coordinates   722840..723337 (+) Length   165 a.a.
NCBI ID   WP_015446852.1    Uniprot ID   M4NB34
Organism   Rhodanobacter denitrificans     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 717840..728337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2APBS1_RS03140 (R2APBS1_0648) - 718274..718891 (-) 618 WP_015446848.1 YceI family protein -
  R2APBS1_RS03145 (R2APBS1_0649) - 719262..720263 (-) 1002 WP_015446849.1 polyprenyl synthetase family protein -
  R2APBS1_RS03150 (R2APBS1_0650) - 720394..721596 (+) 1203 WP_015446850.1 MFS transporter -
  R2APBS1_RS03155 (R2APBS1_0651) - 721699..722676 (+) 978 WP_015446851.1 DedA family protein/thiosulfate sulfurtransferase GlpE -
  R2APBS1_RS03160 (R2APBS1_0652) ssb 722840..723337 (+) 498 WP_015446852.1 single-stranded DNA-binding protein Machinery gene
  R2APBS1_RS03165 (R2APBS1_0653) - 723399..724703 (-) 1305 WP_015446853.1 S8 family serine peptidase -
  R2APBS1_RS03170 (R2APBS1_0654) - 724700..725335 (-) 636 WP_015446854.1 hypothetical protein -
  R2APBS1_RS03175 (R2APBS1_0655) - 725332..725916 (-) 585 WP_015446855.1 sigma-70 family RNA polymerase sigma factor -
  R2APBS1_RS03180 (R2APBS1_0656) - 725993..726955 (-) 963 WP_236126993.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17764.52 Da        Isoelectric Point: 5.9716

>NTDB_id=57123 R2APBS1_RS03160 WP_015446852.1 722840..723337(+) (ssb) [Rhodanobacter denitrificans]
MARGVNKVILIGNLGSDPEVRSTGSGTTVCSFSLATSESWTDKQSGEKQERTEWHRIKIFGRLGEIAGEYLKKGRQVYIE
GSIRTDKFTGKDGVEKYFTDIIASEMQMLGSNEGGGAGGGYQRERPQGGQRQGGGQSRGNDDRGPSRPSPSAPADNGFAD
DEIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=57123 R2APBS1_RS03160 WP_015446852.1 722840..723337(+) (ssb) [Rhodanobacter denitrificans]
ATGGCACGTGGCGTCAACAAAGTCATCCTGATCGGCAACCTGGGCTCGGACCCCGAGGTGCGCAGCACCGGCAGCGGCAC
CACGGTGTGCAGCTTCAGCCTGGCCACTTCCGAGTCGTGGACCGACAAGCAGAGCGGCGAAAAGCAGGAACGCACCGAGT
GGCACCGGATCAAGATCTTCGGTCGCCTCGGCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGCCAGGTCTACATCGAG
GGTTCCATCCGCACTGACAAGTTCACCGGCAAGGATGGCGTGGAGAAGTATTTCACCGACATCATCGCCAGCGAGATGCA
GATGCTCGGCAGCAACGAGGGCGGCGGCGCTGGCGGCGGTTACCAGCGCGAGCGCCCGCAGGGCGGCCAGCGCCAGGGCG
GCGGCCAGTCGCGCGGCAACGACGACCGCGGTCCGTCGCGCCCCTCGCCATCGGCCCCGGCCGACAACGGTTTCGCGGAT
GACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4NB34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.328

100

0.497
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.467
  ssb Neisseria meningitidis MC58

44

100

0.467
  ssb Neisseria gonorrhoeae MS11

44

100

0.467

Multiple sequence alignment