Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   MNG38_RS14415 Genome accession   NZ_CP093289
Coordinates   2758364..2759059 (-) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis strain H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2753364..2764059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS14390 (MNG38_14390) minD 2754300..2755106 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  MNG38_RS14395 (MNG38_14395) minC 2755108..2755788 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  MNG38_RS14400 (MNG38_14400) mreD 2755841..2756359 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  MNG38_RS14405 (MNG38_14405) mreC 2756356..2757228 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  MNG38_RS14410 (MNG38_14410) mreB 2757259..2758272 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  MNG38_RS14415 (MNG38_14415) ysxA/radC 2758364..2759059 (-) 696 WP_015251546.1 RadC family protein Machinery gene
  MNG38_RS14420 (MNG38_14420) maf 2759096..2759665 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  MNG38_RS14425 (MNG38_14425) spoIIB 2759818..2760816 (-) 999 WP_015251545.1 stage II sporulation protein SpoIIB -
  MNG38_RS14430 (MNG38_14430) comC 2760950..2761696 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  MNG38_RS14435 (MNG38_14435) folC 2761836..2763128 (-) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=570945 MNG38_RS14415 WP_015251546.1 2758364..2759059(-) (ysxA/radC) [Bacillus subtilis strain H2]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=570945 MNG38_RS14415 WP_015251546.1 2758364..2759059(-) (ysxA/radC) [Bacillus subtilis strain H2]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTCGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424