Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JFX43_RS11190 Genome accession   NZ_CP075652
Coordinates   2271623..2272159 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain STEC17-183     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2266623..2277159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFX43_RS11170 (JFX43_011170) soxR 2268351..2268815 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  JFX43_RS11175 (JFX43_011175) soxS 2268901..2269224 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JFX43_RS11180 (JFX43_011180) pdeC 2269227..2270813 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  JFX43_RS11185 (JFX43_011185) yjcB 2271243..2271524 (+) 282 WP_001295689.1 YjcB family protein -
  JFX43_RS11190 (JFX43_011190) ssb 2271623..2272159 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JFX43_RS11195 (JFX43_011195) uvrA 2272413..2275235 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JFX43_RS11200 (JFX43_011200) yjbR 2275270..2275626 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JFX43_RS11205 (JFX43_011205) yjbQ 2275630..2276046 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JFX43_RS11210 (JFX43_011210) aphA 2276157..2276870 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=569963 JFX43_RS11190 WP_000168305.1 2271623..2272159(-) (ssb) [Escherichia coli strain STEC17-183]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=569963 JFX43_RS11190 WP_000168305.1 2271623..2272159(-) (ssb) [Escherichia coli strain STEC17-183]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489