Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MMZ68_RS03590 Genome accession   NZ_CP093028
Coordinates   740978..741475 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain H05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 735978..746475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ68_RS03575 (MMZ68_03575) bfr 735986..736450 (+) 465 WP_003093668.1 bacterioferritin -
  MMZ68_RS03580 (MMZ68_03580) uvrA 736522..739359 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  MMZ68_RS03585 (MMZ68_03585) - 739573..740961 (+) 1389 WP_009316331.1 MFS transporter -
  MMZ68_RS03590 (MMZ68_03590) ssb 740978..741475 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  MMZ68_RS03595 (MMZ68_03595) - 741608..742894 (+) 1287 WP_023094429.1 site-specific integrase -
  MMZ68_RS03600 (MMZ68_03600) - 742887..744449 (+) 1563 WP_003137451.1 site-specific integrase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=569953 MMZ68_RS03590 WP_003114685.1 740978..741475(+) (ssb) [Pseudomonas aeruginosa strain H05]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=569953 MMZ68_RS03590 WP_003114685.1 740978..741475(+) (ssb) [Pseudomonas aeruginosa strain H05]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGATTACGACAGCTTCGAC
GACGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515