Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHO27_RS19470 Genome accession   NZ_CP075595
Coordinates   4283037..4283585 (-) Length   182 a.a.
NCBI ID   WP_023629920.1    Uniprot ID   -
Organism   Pseudomonas sp. RC3H12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4278037..4288585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO27_RS19460 (KHO27_19460) - 4280820..4281622 (-) 803 Protein_3842 DMT family transporter -
  KHO27_RS19465 (KHO27_19465) - 4282445..4282948 (+) 504 WP_250888386.1 heme-binding protein -
  KHO27_RS19470 (KHO27_19470) ssb 4283037..4283585 (-) 549 WP_023629920.1 single-stranded DNA-binding protein Machinery gene
  KHO27_RS19475 (KHO27_19475) - 4283595..4284989 (-) 1395 WP_198754391.1 MFS transporter -
  KHO27_RS19480 (KHO27_19480) uvrA 4285119..4287953 (+) 2835 WP_046857340.1 excinuclease ABC subunit UvrA -
  KHO27_RS19485 (KHO27_19485) bfr 4288026..4288490 (-) 465 WP_028690240.1 bacterioferritin -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20221.27 Da        Isoelectric Point: 5.9286

>NTDB_id=569805 KHO27_RS19470 WP_023629920.1 4283037..4283585(-) (ssb) [Pseudomonas sp. RC3H12]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQGGGDQYNQGGGNNYNQGGQQQQYNQAPRQQAQRPQQAPQRP
APQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=569805 KHO27_RS19470 WP_023629920.1 4283037..4283585(-) (ssb) [Pseudomonas sp. RC3H12]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGCACCGAGT
GGCACCGTGTCTCGCTGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGGGCGGTGGCGACCAGTACAACCAGGGTGGTGGCAACAACTACA
ACCAGGGCGGTCAGCAGCAACAGTACAACCAGGCCCCACGCCAACAGGCCCAGCGCCCGCAACAAGCGCCGCAGCGCCCA
GCGCCGCAACAGCCGGCTCCGCAGCCTGCCGCTGACTTCGACAGCTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.738

100

0.56
  ssb Glaesserella parasuis strain SC1401

50.267

100

0.516
  ssb Neisseria gonorrhoeae MS11

48.108

100

0.489
  ssb Neisseria meningitidis MC58

48.108

100

0.489