Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI797_RS01505 Genome accession   NZ_CP075564
Coordinates   314845..315420 (-) Length   191 a.a.
NCBI ID   WP_226171147.1    Uniprot ID   -
Organism   Aeromonas media strain TR3_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 309845..320420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI797_RS01490 (KI797_01485) - 309906..311783 (-) 1878 WP_034524358.1 integrase -
  KI797_RS01495 (KI797_01490) - 311793..313361 (-) 1569 WP_174218922.1 site-specific integrase -
  KI797_RS01500 (KI797_01495) - 313354..314679 (-) 1326 WP_043147737.1 site-specific integrase -
  KI797_RS01505 (KI797_01500) ssb 314845..315420 (-) 576 WP_226171147.1 single-stranded DNA-binding protein Machinery gene
  KI797_RS01510 (KI797_01505) - 315937..316575 (+) 639 WP_139750669.1 LuxR C-terminal-related transcriptional regulator -
  KI797_RS01515 (KI797_01510) uvrA 316670..319498 (+) 2829 WP_005328767.1 excinuclease ABC subunit UvrA -
  KI797_RS20985 - 319685..319810 (-) 126 WP_005328766.1 hypothetical protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20907.38 Da        Isoelectric Point: 5.9247

>NTDB_id=569669 KI797_RS01505 WP_226171147.1 314845..315420(-) (ssb) [Aeromonas media strain TR3_1]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQLNMQP
QGGYGRPAPQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=569669 KI797_RS01505 WP_226171147.1 314845..315420(-) (ssb) [Aeromonas media strain TR3_1]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAATACCTGAAGAAGGGCTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGTGGTCAGGAGCGCTACACCACAGAGGTGCTGGTCGACAGTTT
CACCGGCGTGATGCAGATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGCCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAAGCGATGCAACGCCCGGCCGCCGCCCCGCAGCTGAATATGCAGCCG
CAGGGTGGTTACGGTCGTCCTGCCCCGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGATGA
CGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.231

100

0.707
  ssb Glaesserella parasuis strain SC1401

53.439

98.953

0.529
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45