Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MMZ72_RS09185 Genome accession   NZ_CP093021
Coordinates   1978415..1980427 (+) Length   670 a.a.
NCBI ID   WP_015502637.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1973415..1985427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS09165 (MMZ72_09165) - 1974297..1976294 (+) 1998 WP_024914978.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  MMZ72_RS09170 (MMZ72_09170) comEA 1976485..1976814 (+) 330 WP_024914979.1 ComEA family DNA-binding protein Machinery gene
  MMZ72_RS09180 (MMZ72_09180) - 1977031..1978227 (-) 1197 WP_024914980.1 amino acid aminotransferase -
  MMZ72_RS09185 (MMZ72_09185) uvrB 1978415..1980427 (+) 2013 WP_015502637.1 excinuclease ABC subunit UvrB Machinery gene
  MMZ72_RS09190 (MMZ72_09190) - 1980431..1981930 (-) 1500 WP_079752909.1 MDR family MFS transporter -
  MMZ72_RS09195 (MMZ72_09195) - 1981980..1983014 (-) 1035 WP_024914982.1 HlyD family secretion protein -
  MMZ72_RS09200 (MMZ72_09200) - 1983117..1984037 (+) 921 WP_003091419.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 76066.33 Da        Isoelectric Point: 5.1461

>NTDB_id=569657 MMZ72_RS09185 WP_015502637.1 1978415..1980427(+) (uvrB) [Pseudomonas aeruginosa strain H09]
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKTFF
PHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHL
DRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGEP
PPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEA
EHAGRVIEQVVRPTGLVDPEIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQ
RAIDETERRRAKQIAFNQAHGIVPKGVRKDIKDILEGAVVPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEK
MYQLARDLEFEAAAQLRDEIQTLRERLVNV

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=569657 MMZ72_RS09185 WP_015502637.1 1978415..1980427(+) (uvrB) [Pseudomonas aeruginosa strain H09]
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCTGCCGGCGACCAGCCGGAAGCCATCCGGCAGATGGTCGAGGGGCT
GGAGGCGGGGCTTTCGCACCAGACTCTGCTGGGTGTGACGGGCTCCGGCAAGACCTTCAGCATCGCCAACGTGATCGCCC
AGGTGCAGCGCCCGACCCTGGTCCTGGCGCCGAACAAGACCCTGGCTGCCCAGCTCTACGGGGAGTTCAAGACGTTCTTC
CCGCACAATTCCGTGGAGTACTTCGTTTCCTACTACGACTATTACCAGCCGGAGGCCTACGTACCGTCTTCCGATACCTA
TATCGAGAAGGACTCCTCGATCAACGACCACATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGTCCGG
ATGCGATCATCGTTGCCACCGTGTCTTCCATCTACGGCCTCGGCGATCCCGCGTCCTACCTGAAGATGGTCCTGCACCTG
GATCGCGGCGACCGCATCGACCAGCGCGAACTGCTGCGGCGACTGACCAGCTTGCAGTACACCCGCAACGACATGGATTT
CGCCCGTGCGACTTTCCGTGTGCGTGGCGATGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAGGCGATTCGTGTCG
AGTTGTTCGACGACGAGGTGGAAAGCCTCTCGGCCTTCGATCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTATCCCAAGAGCCACTACGTGACCCCGCGCGAGACCCTGCTGGAGGCGGTCGACCAGATCAAGGCCGAACTCAA
GGAACGCCTGGACTACCTGCGCAACAACAACAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGCACGCGTTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTACTCACGCTATCTTTCCGGGCGGGCCCCCGGCGAGCCG
CCGCCGACGCTCTATGACTACCTGCCGGCCAACTCGCTGCTGGTTATCGACGAATCGCACGTCAGCGTTCCGCAGGTCGG
GGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAGACCCTGGTGGAATACGGTTTCCGCCTGCCTTCGGCGCTGGACAACC
GGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTGAGTCCACAGACCATCTTCGTCTCCGCCACCCCGGGCCCCTACGAGGCG
GAACATGCCGGGCGGGTCATCGAGCAGGTGGTGCGTCCCACCGGGCTGGTCGATCCGGAGATCGAGGTACGTCCGGCGAT
GACCCAGGTGGACGACCTGCTCTCGCAGATCCGCCAGCGGGTGGCCAAGGACGAGCGGGTGCTGGTGACTACCCTGACCA
AGCGCATGGCCGAGGACCTCACCGATTATCTCGGCGATCATGACGTGCGGGTGCGCTACCTGCACTCGGACATCGATACC
GTCGAGCGAGTGGAGATCATCCGCGACCTGCGCGCCGGTGCGTTCGACGTGCTGGTGGGGATCAACCTGCTGCGCGAAGG
CCTGGACATGCCCGAGGTGTCGCTGGTGGCGATCCTCGACGCGGACAAGGAAGGCTTCCTGCGCTCGGAGCGCTCGCTGA
TCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATCCTCTACGCCGACAACGTCACCGGCTCGATGCAG
CGAGCGATCGACGAGACCGAGCGGCGTCGGGCCAAGCAGATCGCCTTCAACCAAGCCCATGGCATCGTGCCCAAGGGGGT
GCGCAAGGACATCAAGGACATTCTCGAAGGCGCCGTGGTGCCCGGCGCGCGCGGCAAGCGCAAAGGCGTGGCCAAGGTGG
CGGAGGAGAGTGGGCGCTACGAGAACGAACTGCGCTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAACTGGAGGAAAAG
ATGTACCAGTTGGCCCGCGACCTGGAGTTCGAGGCGGCGGCGCAACTGCGCGACGAGATCCAGACGCTGCGCGAGCGCCT
GGTCAACGTCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(11-118)

UvrB/uvrC motif (UVR)

(632-665)

Helicase conserved C-terminal domain (Helicase_C)

(435-542)

UvrB interaction domain (UvrB_inter)

(158-248)

Ultra-violet resistance protein B (UvrB)

(550-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.686

98.06

0.566
  uvrB Streptococcus pneumoniae R6

57.686

98.06

0.566
  uvrB Streptococcus pneumoniae D39

57.686

98.06

0.566