Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MMZ72_RS09170 Genome accession   NZ_CP093021
Coordinates   1976485..1976814 (+) Length   109 a.a.
NCBI ID   WP_024914979.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1971485..1981814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS09155 (MMZ72_09155) - 1971783..1972988 (+) 1206 WP_031657162.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  MMZ72_RS09160 (MMZ72_09160) - 1973174..1974202 (+) 1029 WP_058139341.1 glycosyltransferase family 4 protein -
  MMZ72_RS09165 (MMZ72_09165) - 1974297..1976294 (+) 1998 WP_024914978.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  MMZ72_RS09170 (MMZ72_09170) comEA 1976485..1976814 (+) 330 WP_024914979.1 ComEA family DNA-binding protein Machinery gene
  MMZ72_RS09180 (MMZ72_09180) - 1977031..1978227 (-) 1197 WP_024914980.1 amino acid aminotransferase -
  MMZ72_RS09185 (MMZ72_09185) uvrB 1978415..1980427 (+) 2013 WP_015502637.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11407.42 Da        Isoelectric Point: 9.1457

>NTDB_id=569656 MMZ72_RS09170 WP_024914979.1 1976485..1976814(+) (comEA) [Pseudomonas aeruginosa strain H09]
MHLIKSALILILFACLPFSASAAPVAVAKNPLAATTPATIVSPGERVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=569656 MMZ72_RS09170 WP_024914979.1 1976485..1976814(+) (comEA) [Pseudomonas aeruginosa strain H09]
ATGCACCTGATCAAATCCGCCCTGATTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGATCGTGTCGCCGGGGGAGCGGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

37.719

100

0.394
  comEA Vibrio cholerae strain A1552

37.719

100

0.394
  comEA/comE1 Glaesserella parasuis strain SC1401

39.423

95.413

0.376