Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KHS93_RS19585 Genome accession   NZ_CP075547
Coordinates   3957420..3957938 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3952420..3962938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS19555 (KHS93_19555) - 3953615..3953995 (-) 381 WP_044052737.1 VOC family protein -
  KHS93_RS19560 (KHS93_19560) - 3954053..3954991 (-) 939 WP_014306206.1 LacI family DNA-binding transcriptional regulator -
  KHS93_RS19565 (KHS93_19565) xth 3955054..3955812 (-) 759 WP_069473662.1 exodeoxyribonuclease III -
  KHS93_RS19570 (KHS93_19570) - 3955809..3956366 (-) 558 WP_014306207.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  KHS93_RS19575 (KHS93_19575) - 3956363..3956944 (-) 582 WP_004392986.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  KHS93_RS19580 (KHS93_19580) rpsR 3957137..3957376 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  KHS93_RS19585 (KHS93_19585) ssbA 3957420..3957938 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  KHS93_RS19590 (KHS93_19590) rpsF 3957978..3958265 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  KHS93_RS19595 (KHS93_19595) ychF 3958377..3959477 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  KHS93_RS19600 (KHS93_19600) - 3959604..3961607 (-) 2004 WP_004392974.1 molybdopterin-dependent oxidoreductase -
  KHS93_RS19605 (KHS93_19605) - 3961654..3961860 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=569493 KHS93_RS19585 WP_004392979.1 3957420..3957938(-) (ssbA) [Bacillus amyloliquefaciens strain SN16-1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=569493 KHS93_RS19585 WP_004392979.1 3957420..3957938(-) (ssbA) [Bacillus amyloliquefaciens strain SN16-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGTTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378