Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KHS93_RS12130 Genome accession   NZ_CP075547
Coordinates   2519224..2519991 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2514224..2524991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS12110 (KHS93_12110) - 2514426..2515238 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  KHS93_RS12115 (KHS93_12115) ccpN 2515264..2515902 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  KHS93_RS12120 (KHS93_12120) glyS 2516003..2518042 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  KHS93_RS12125 (KHS93_12125) glyQ 2518035..2518922 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  KHS93_RS12130 (KHS93_12130) recO 2519224..2519991 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  KHS93_RS12135 (KHS93_12135) - 2520028..2520171 (-) 144 WP_007408286.1 YqzL family protein -
  KHS93_RS12140 (KHS93_12140) era 2520327..2521232 (-) 906 WP_003152978.1 GTPase Era -
  KHS93_RS12145 (KHS93_12145) - 2521213..2521623 (-) 411 WP_003152976.1 cytidine deaminase -
  KHS93_RS12150 (KHS93_12150) - 2521747..2522121 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  KHS93_RS12155 (KHS93_12155) ybeY 2522102..2522575 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  KHS93_RS12160 (KHS93_12160) - 2522576..2524708 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=569466 KHS93_RS12130 WP_003152982.1 2519224..2519991(-) (recO) [Bacillus amyloliquefaciens strain SN16-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=569466 KHS93_RS12130 WP_003152982.1 2519224..2519991(-) (recO) [Bacillus amyloliquefaciens strain SN16-1]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894