Detailed information
Bioinformatically predicted
Overview
| Name | comC | Type | Machinery gene |
| Locus tag | KIK01_RS09715 | Genome accession | NZ_CP075489 |
| Coordinates | 1893805..1894494 (+) | Length | 229 a.a. |
| NCBI ID | WP_076645336.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei subsp. sakei strain ob4.1 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1888805..1899494
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KIK01_RS09695 (KIK01_09695) | - | 1889247..1889798 (+) | 552 | WP_061827366.1 | isochorismatase family cysteine hydrolase | - |
| KIK01_RS09700 (KIK01_09700) | fusA | 1890368..1892455 (-) | 2088 | WP_016265721.1 | elongation factor G | - |
| KIK01_RS09705 (KIK01_09705) | rpsG | 1892551..1893021 (-) | 471 | WP_004270185.1 | 30S ribosomal protein S7 | - |
| KIK01_RS09710 (KIK01_09710) | rpsL | 1893111..1893524 (-) | 414 | WP_004270179.1 | 30S ribosomal protein S12 | - |
| KIK01_RS09715 (KIK01_09715) | comC | 1893805..1894494 (+) | 690 | WP_076645336.1 | A24 family peptidase | Machinery gene |
| KIK01_RS09720 (KIK01_09720) | - | 1894498..1895070 (-) | 573 | WP_061827365.1 | isochorismatase family protein | - |
| KIK01_RS09725 (KIK01_09725) | rpoC | 1895244..1898888 (-) | 3645 | WP_035147345.1 | DNA-directed RNA polymerase subunit beta' | - |
Sequence
Protein
Download Length: 229 a.a. Molecular weight: 26190.50 Da Isoelectric Point: 7.2085
>NTDB_id=569331 KIK01_RS09715 WP_076645336.1 1893805..1894494(+) (comC) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGATIFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLEPVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGATIFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLEPVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ
Nucleotide
Download Length: 690 bp
>NTDB_id=569331 KIK01_RS09715 WP_076645336.1 1893805..1894494(+) (comC) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCACCATCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTGGGCCTTGAACCCGTTTTGCGAATTCTCTTGGCGGCCTG
TCTAATTTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTAATTCTACTTCTACAAACACCGCAGTAA
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCACCATCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTGGGCCTTGAACCCGTTTTGCGAATTCTCTTGGCGGCCTG
TCTAATTTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTAATTCTACTTCTACAAACACCGCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comC | Latilactobacillus sakei subsp. sakei 23K |
97.38 |
100 |
0.974 |