Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KIK01_RS03015 Genome accession   NZ_CP075489
Coordinates   591206..591634 (+) Length   142 a.a.
NCBI ID   WP_154255254.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 586206..596634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS03000 (KIK01_03000) - 587784..588872 (+) 1089 WP_213923430.1 MraY family glycosyltransferase -
  KIK01_RS03005 (KIK01_03005) - 588899..589564 (-) 666 WP_025016329.1 YigZ family protein -
  KIK01_RS03010 (KIK01_03010) comFA 589626..590963 (+) 1338 WP_052039239.1 DEAD/DEAH box helicase Machinery gene
  KIK01_RS03015 (KIK01_03015) comFC 591206..591634 (+) 429 WP_154255254.1 ComF family protein Machinery gene
  KIK01_RS03020 (KIK01_03020) raiA 591761..592306 (+) 546 WP_011374202.1 ribosome-associated translation inhibitor RaiA -
  KIK01_RS03025 (KIK01_03025) secA 592555..594918 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  KIK01_RS03030 (KIK01_03030) prfB 594988..596104 (+) 1117 WP_099049013.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16678.13 Da        Isoelectric Point: 10.0721

>NTDB_id=569307 KIK01_RS03015 WP_154255254.1 591206..591634(+) (comFC) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASSQFFELIPQELPHKPQSIIILDDIYTTGRTVWHAQQCLRARYPQIAINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=569307 KIK01_RS03015 WP_154255254.1 591206..591634(+) (comFC) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGCTATTGAAAAAGCGGCCAACAGAGAAGGGCCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTTCACAATTTTTTGAATTAATACCGCAAGAATTACCGCATAAGCCACAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTCGGTATCCACAAATTG
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

95.775

100

0.958
  comFC Lactococcus lactis subsp. cremoris KW2

38.028

100

0.38