Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MM141_RS03595 Genome accession   NZ_CP093012
Coordinates   746514..747008 (+) Length   164 a.a.
NCBI ID   WP_023131574.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 741514..752008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM141_RS03580 (MM141_03580) bfr 741522..741986 (+) 465 WP_003093668.1 bacterioferritin -
  MM141_RS03585 (MM141_03585) uvrA 742058..744895 (-) 2838 WP_003121863.1 excinuclease ABC subunit UvrA Machinery gene
  MM141_RS03590 (MM141_03590) - 745109..746497 (+) 1389 WP_003103910.1 MFS transporter -
  MM141_RS03595 (MM141_03595) ssb 746514..747008 (+) 495 WP_023131574.1 single-stranded DNA-binding protein Machinery gene
  MM141_RS03600 (MM141_03600) pchA 747097..748527 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  MM141_RS03605 (MM141_03605) pchB 748524..748829 (-) 306 WP_009877106.1 isochorismate lyase PchB -
  MM141_RS03610 (MM141_03610) pchC 748829..749584 (-) 756 WP_009877105.1 pyochelin biosynthesis editing thioesterase PchC -
  MM141_RS03615 (MM141_03615) pchD 749581..751224 (-) 1644 WP_009877104.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18429.33 Da        Isoelectric Point: 5.2781

>NTDB_id=569138 MM141_RS03595 WP_023131574.1 746514..747008(+) (ssb) [Pseudomonas aeruginosa strain H20]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQSRPAPQQQPAPQPAQDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=569138 MM141_RS03595 WP_023131574.1 746514..747008(+) (ssb) [Pseudomonas aeruginosa strain H20]
ATGGCCCGTGGGGTTAACAAAGTCATTCTAGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGACGAC
GACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60

100

0.64
  ssb Glaesserella parasuis strain SC1401

51.934

100

0.573
  ssb Neisseria meningitidis MC58

46.927

100

0.512
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.512