Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHQ09_RS08090 Genome accession   NZ_CP075361
Coordinates   1290895..1291434 (+) Length   179 a.a.
NCBI ID   WP_213597562.1    Uniprot ID   -
Organism   Pseudochrobactrum algeriensis isolate C130915_07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1285895..1296434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHQ09_RS08060 (KHQ09_08060) - 1286361..1286573 (+) 213 WP_213597555.1 ParD-like family protein -
  KHQ09_RS08065 (KHQ09_08065) map 1286570..1287367 (+) 798 WP_213597557.1 type I methionyl aminopeptidase -
  KHQ09_RS08070 (KHQ09_08070) - 1287409..1288050 (-) 642 WP_213597559.1 NAD(P)-dependent oxidoreductase -
  KHQ09_RS08075 (KHQ09_08075) - 1288241..1288693 (+) 453 WP_238481593.1 winged helix-turn-helix transcriptional regulator -
  KHQ09_RS08080 (KHQ09_08080) - 1288840..1289235 (-) 396 WP_075655544.1 BspC domain-containing protein -
  KHQ09_RS08085 (KHQ09_08085) rpsD 1290119..1290736 (+) 618 WP_022711609.1 30S ribosomal protein S4 -
  KHQ09_RS08090 (KHQ09_08090) ssb 1290895..1291434 (+) 540 WP_213597562.1 single-stranded DNA-binding protein Machinery gene
  KHQ09_RS08095 (KHQ09_08095) - 1291485..1292117 (-) 633 WP_022710390.1 MarC family protein -
  KHQ09_RS08100 (KHQ09_08100) gyrA 1292516..1295245 (+) 2730 WP_210307598.1 DNA gyrase subunit A -
  KHQ09_RS08105 (KHQ09_08105) - 1295448..1295627 (-) 180 WP_022710388.1 hypothetical protein -
  KHQ09_RS08110 (KHQ09_08110) coaD 1295919..1296413 (+) 495 WP_213599882.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19273.01 Da        Isoelectric Point: 5.8358

>NTDB_id=568995 KHQ09_RS08090 WP_213597562.1 1290895..1291434(+) (ssb) [Pseudochrobactrum algeriensis isolate C130915_07]
MAGSVNKVILVGNLGADPEIRRLNSGEPVANLRIATSESWRDRQSGERKDKTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGQLQTRKWTDQNGNERYTTEIVLQKFRGELQMLDSRGEGGGGGGGRFEGSGGDRFAGGGGSSRGGDYGSSGGGNDFGRS
SPQQQSGGFSHDLDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=568995 KHQ09_RS08090 WP_213597562.1 1290895..1291434(+) (ssb) [Pseudochrobactrum algeriensis isolate C130915_07]
ATGGCAGGCTCAGTCAATAAAGTTATTCTCGTCGGTAATCTCGGAGCGGATCCTGAAATCCGCCGTCTGAACTCCGGTGA
GCCGGTTGCAAACCTGCGTATCGCAACATCGGAAAGCTGGCGCGACCGCCAGTCCGGTGAGCGTAAGGACAAGACCGAAT
GGCACAGCGTTGTAATCTTCAACGAAAATCTGGCCAAGGTTGCAGAACAGTATCTGAAAAAAGGCGCCAAGGTTTACATT
GAAGGTCAGTTGCAGACCCGCAAATGGACAGACCAGAACGGCAATGAACGCTACACAACTGAAATCGTGTTGCAGAAATT
CCGCGGTGAGTTGCAGATGCTCGACAGCCGTGGCGAAGGCGGTGGCGGTGGTGGCGGCCGTTTTGAAGGCAGCGGCGGTG
ATCGCTTTGCCGGTGGCGGCGGTTCATCGCGCGGCGGTGACTATGGCAGCAGCGGCGGCGGCAATGATTTCGGTCGTTCC
AGCCCGCAGCAGCAGTCCGGCGGTTTCAGCCATGACTTGGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.677

100

0.514
  ssb Vibrio cholerae strain A1552

49.721

100

0.497
  ssb Neisseria gonorrhoeae MS11

38.624

100

0.408
  ssb Neisseria meningitidis MC58

40

100

0.402