Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KIL00_RS21980 Genome accession   NZ_CP075344
Coordinates   4198395..4198913 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4193395..4203913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS21950 (KIL00_21950) yyaJ 4193905..4195260 (+) 1356 WP_014481501.1 MFS transporter -
  KIL00_RS21955 (KIL00_21955) maa 4195294..4195848 (-) 555 WP_121549258.1 sugar O-acetyltransferase -
  KIL00_RS21960 (KIL00_21960) yyaH 4195864..4196244 (-) 381 WP_069837909.1 VOC family protein -
  KIL00_RS21965 (KIL00_21965) ccpB 4196300..4197230 (-) 931 Protein_4289 transcriptional regulator CcpB -
  KIL00_RS21970 (KIL00_21970) xth 4197289..4198047 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  KIL00_RS21975 (KIL00_21975) rpsR 4198112..4198351 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  KIL00_RS21980 (KIL00_21980) ssbA 4198395..4198913 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  KIL00_RS21985 (KIL00_21985) rpsF 4198954..4199241 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  KIL00_RS21990 (KIL00_21990) ychF 4199352..4200452 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  KIL00_RS21995 (KIL00_21995) yyaE 4200579..4202582 (-) 2004 WP_069837910.1 molybdopterin-dependent oxidoreductase -
  KIL00_RS22000 (KIL00_22000) yyzM 4202633..4202839 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=568959 KIL00_RS21980 WP_003219228.1 4198395..4198913(-) (ssbA) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=568959 KIL00_RS21980 WP_003219228.1 4198395..4198913(-) (ssbA) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378