Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KIP84_RS01000 Genome accession   NZ_CP075323
Coordinates   220142..220729 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 215142..225729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS00975 (KIP84_00975) - 215212..216018 (-) 807 WP_213689163.1 SDR family oxidoreductase -
  KIP84_RS00980 (KIP84_00980) - 216122..216493 (-) 372 WP_005300704.1 MerR family transcriptional regulator -
  KIP84_RS00985 (KIP84_00985) tenA 216559..217233 (-) 675 WP_046811776.1 thiaminase II -
  KIP84_RS00990 (KIP84_00990) - 217497..218579 (+) 1083 WP_108009816.1 DUF475 domain-containing protein -
  KIP84_RS00995 (KIP84_00995) - 218726..220090 (+) 1365 WP_005078603.1 MFS transporter -
  KIP84_RS01000 (KIP84_01000) ssb 220142..220729 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  KIP84_RS01005 (KIP84_01005) - 220770..221093 (-) 324 WP_213689164.1 AzlD domain-containing protein -
  KIP84_RS01010 (KIP84_01010) - 221090..221785 (-) 696 WP_063097714.1 AzlC family ABC transporter permease -
  KIP84_RS01015 (KIP84_01015) - 221854..222402 (+) 549 WP_002117406.1 XRE family transcriptional regulator -
  KIP84_RS01020 (KIP84_01020) - 222708..224150 (+) 1443 WP_213689165.1 amino acid permease -
  KIP84_RS01025 (KIP84_01025) - 224216..225715 (-) 1500 WP_199964055.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=568755 KIP84_RS01000 WP_005066890.1 220142..220729(+) (ssb) [Acinetobacter sp. BHS4]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=568755 KIP84_RS01000 WP_005066890.1 220142..220729(+) (ssb) [Acinetobacter sp. BHS4]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGTGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCTGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385