Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MMB17_RS16045 Genome accession   NZ_CP092848
Coordinates   3430194..3430760 (+) Length   188 a.a.
NCBI ID   WP_241099526.1    Uniprot ID   -
Organism   Methylobacterium organophilum strain WPA_B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3425194..3435760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMB17_RS16030 (MMB17_16030) - 3425561..3425974 (-) 414 WP_241099523.1 hypothetical protein -
  MMB17_RS16035 (MMB17_16035) polA 3426375..3429509 (+) 3135 WP_241099525.1 DNA polymerase I -
  MMB17_RS16040 (MMB17_16040) - 3429571..3430023 (+) 453 WP_238312746.1 DNA polymerase III subunit chi -
  MMB17_RS16045 (MMB17_16045) ssb 3430194..3430760 (+) 567 WP_241099526.1 single-stranded DNA-binding protein Machinery gene
  MMB17_RS16050 (MMB17_16050) - 3430885..3431409 (-) 525 WP_241099527.1 hypothetical protein -
  MMB17_RS16055 (MMB17_16055) - 3431542..3432912 (-) 1371 WP_241099529.1 MATE family efflux transporter -
  MMB17_RS16060 (MMB17_16060) gyrA 3433026..3435677 (-) 2652 WP_420847379.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19979.83 Da        Isoelectric Point: 6.0184

>NTDB_id=568692 MMB17_RS16045 WP_241099526.1 3430194..3430760(+) (ssb) [Methylobacterium organophilum strain WPA_B]
MAGSVNKVILVGNLGRDPETRRLASGDPVVNLRLATSESWKDKMSGERKEKTEWHSVVIYNENLARVAEQYLRKGSKVYI
EGQLQTRKWTDNSGVEKYTTEVVLQRFRGEMTILDGRGGGGDFAGEEESGGQISRGGSRDEYGGGRGGDRGGDYGGGGGG
GRSSGGGSRPSGGGGGKPNYDLDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=568692 MMB17_RS16045 WP_241099526.1 3430194..3430760(+) (ssb) [Methylobacterium organophilum strain WPA_B]
ATGGCGGGCAGCGTGAACAAGGTGATCCTGGTGGGCAATCTCGGGCGCGATCCCGAGACGCGGCGCCTCGCCTCCGGTGA
TCCCGTGGTGAACCTGCGGCTGGCGACGTCCGAGTCCTGGAAGGACAAGATGTCGGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGAGAACCTCGCCCGCGTGGCCGAGCAGTATCTGCGCAAGGGGTCGAAGGTCTATATC
GAGGGCCAGCTCCAGACCCGGAAATGGACCGACAATTCCGGTGTCGAGAAGTACACGACCGAGGTCGTGCTGCAGCGCTT
CCGCGGCGAGATGACGATCCTCGACGGCCGCGGCGGCGGCGGCGACTTCGCCGGCGAGGAAGAGAGCGGCGGCCAGATCA
GCCGCGGCGGCTCCCGCGACGAGTACGGCGGCGGCCGGGGCGGGGACCGCGGGGGCGATTACGGCGGGGGCGGCGGTGGT
GGTCGCTCCTCGGGCGGCGGCTCCCGCCCGTCCGGCGGGGGCGGCGGCAAGCCGAACTACGACCTCGACGACGACATCCC
GTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.597

100

0.473
  ssb Vibrio cholerae strain A1552

45.503

100

0.457
  ssb Neisseria meningitidis MC58

37.297

98.404

0.367
  ssb Neisseria gonorrhoeae MS11

36.757

98.404

0.362