Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI608_RS02640 Genome accession   NZ_CP075192
Coordinates   567784..568254 (+) Length   156 a.a.
NCBI ID   WP_226450351.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 132     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 562784..573254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI608_RS02630 (KI608_02630) - 565588..566400 (+) 813 WP_226450349.1 M48 family metalloprotease -
  KI608_RS02635 (KI608_02635) - 566563..567771 (+) 1209 WP_226450350.1 MFS transporter -
  KI608_RS02640 (KI608_02640) ssb 567784..568254 (+) 471 WP_226450351.1 single-stranded DNA-binding protein Machinery gene
  KI608_RS02645 (KI608_02645) - 568376..569224 (+) 849 WP_226450352.1 HDOD domain-containing protein -
  KI608_RS02650 (KI608_02650) - 569300..571192 (+) 1893 WP_226450353.1 potassium transporter Kup -
  KI608_RS02655 (KI608_02655) - 571202..572326 (-) 1125 WP_226450354.1 GGDEF domain-containing protein -
  KI608_RS02660 (KI608_02660) - 572342..572830 (-) 489 WP_226450355.1 adenylyltransferase/cytidyltransferase family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17118.10 Da        Isoelectric Point: 5.3602

>NTDB_id=568594 KI608_RS02640 WP_226450351.1 567784..568254(+) (ssb) [Ferribacterium limneticum strain 132]
MASVNKWIGIGNLGRDPETRYTASGEAICNFSIACTESWKDKQSGERKEMTEWVRISAFGKLAEICSQYLKKGSQVYVEG
SLRTRKWTDKEGQERYTTEIRCDDMKMLGSRQGMGAPAGGSGGGGGGYDEPTDYSPAPPKNKPKPSFDDLGDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=568594 KI608_RS02640 WP_226450351.1 567784..568254(+) (ssb) [Ferribacterium limneticum strain 132]
ATGGCATCGGTTAACAAATGGATCGGCATTGGCAATCTGGGCCGTGACCCGGAAACGCGCTATACCGCCAGCGGTGAAGC
GATCTGCAATTTCAGCATCGCTTGTACCGAAAGCTGGAAGGACAAGCAGAGCGGCGAGCGCAAGGAAATGACCGAATGGG
TCCGTATCTCCGCTTTTGGCAAGCTGGCCGAGATTTGCAGCCAGTACCTGAAGAAGGGCTCGCAGGTTTACGTCGAAGGC
AGCCTGCGGACCCGCAAGTGGACCGACAAGGAAGGCCAGGAGCGCTACACCACCGAAATCCGCTGCGATGACATGAAAAT
GCTGGGCTCGCGTCAAGGCATGGGTGCTCCCGCCGGCGGTAGTGGCGGTGGTGGTGGCGGTTACGACGAACCGACCGATT
ACTCGCCGGCGCCGCCGAAGAACAAGCCGAAGCCGTCCTTTGACGATCTCGGCGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.458

100

0.538
  ssb Glaesserella parasuis strain SC1401

44.444

100

0.513
  ssb Neisseria meningitidis MC58

45.402

100

0.506
  ssb Neisseria gonorrhoeae MS11

45.402

100

0.506