Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI610_RS02320 Genome accession   NZ_CP075189
Coordinates   480682..481143 (+) Length   153 a.a.
NCBI ID   WP_226403635.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 77     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 475682..486143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI610_RS02310 (KI610_02310) - 478495..479310 (+) 816 WP_226497082.1 restriction endonuclease -
  KI610_RS02315 (KI610_02315) - 479463..480671 (+) 1209 WP_226497083.1 MFS transporter -
  KI610_RS02320 (KI610_02320) ssb 480682..481143 (+) 462 WP_226403635.1 single-stranded DNA-binding protein Machinery gene
  KI610_RS02325 (KI610_02325) - 481208..482053 (+) 846 WP_226497084.1 HDOD domain-containing protein -
  KI610_RS02330 (KI610_02330) - 482114..484000 (+) 1887 WP_226497085.1 potassium transporter Kup -
  KI610_RS02335 (KI610_02335) - 484573..485952 (-) 1380 WP_226497086.1 ribulose-bisphosphate carboxylase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16759.80 Da        Isoelectric Point: 5.9686

>NTDB_id=568523 KI610_RS02320 WP_226403635.1 480682..481143(+) (ssb) [Ferribacterium limneticum strain 77]
MASVNKAIIVGNLGKDPEVRYTASGEAMCNITVATSENWKDKATGEKKELTEWHRISFFGKLAEICGQYLKKGSQVYVEG
SIRTRKWTDKEGQERYTTEIRGDEMKMLGSRQGMGAPAGGGGGYDSEPTDYAPAPAKNKPKPSFDDLGDDIPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=568523 KI610_RS02320 WP_226403635.1 480682..481143(+) (ssb) [Ferribacterium limneticum strain 77]
ATGGCATCGGTTAACAAGGCAATCATCGTCGGCAATCTGGGCAAGGACCCGGAAGTTCGTTACACGGCGAGCGGCGAGGC
GATGTGCAACATCACGGTCGCGACCAGCGAAAACTGGAAGGACAAGGCAACCGGCGAGAAGAAGGAACTGACCGAATGGC
ACCGCATTTCCTTCTTCGGCAAGCTGGCCGAAATCTGCGGTCAGTATCTGAAAAAAGGCTCGCAGGTTTATGTCGAAGGC
AGCATCCGCACCCGTAAATGGACCGACAAGGAAGGCCAGGAGCGCTACACGACGGAAATTCGCGGTGACGAAATGAAAAT
GCTCGGCTCGCGCCAGGGCATGGGCGCCCCGGCTGGCGGTGGCGGCGGTTACGACAGCGAGCCGACCGATTACGCCCCGG
CCCCGGCCAAGAACAAGCCGAAGCCATCCTTCGACGATCTCGGCGACGACATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.829

100

0.601
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.582
  ssb Neisseria gonorrhoeae MS11

46.286

100

0.529
  ssb Neisseria meningitidis MC58

46.286

100

0.529