Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI612_RS17660 Genome accession   NZ_CP075188
Coordinates   3699202..3699669 (-) Length   155 a.a.
NCBI ID   WP_226441369.1    Uniprot ID   -
Organism   Quatrionicoccus australiensis strain D9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3694202..3704669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI612_RS17645 (KI612_17695) rfaE2 3695749..3696237 (+) 489 WP_226441366.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase -
  KI612_RS17650 (KI612_17700) - 3696283..3698178 (-) 1896 WP_226441367.1 potassium transporter Kup -
  KI612_RS17655 (KI612_17705) - 3698264..3699112 (-) 849 WP_226441368.1 HDOD domain-containing protein -
  KI612_RS17660 (KI612_17710) ssb 3699202..3699669 (-) 468 WP_226441369.1 single-stranded DNA-binding protein Machinery gene
  KI612_RS17665 (KI612_17715) - 3699682..3700890 (-) 1209 WP_226441370.1 MFS transporter -
  KI612_RS17670 (KI612_17720) aspA 3701150..3702574 (+) 1425 WP_226441371.1 aspartate ammonia-lyase -
  KI612_RS17675 (KI612_17725) - 3702617..3703921 (+) 1305 WP_226441372.1 dicarboxylate/amino acid:cation symporter -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17120.10 Da        Isoelectric Point: 5.3522

>NTDB_id=568513 KI612_RS17660 WP_226441369.1 3699202..3699669(-) (ssb) [Quatrionicoccus australiensis strain D9]
MASVNKWIGIGNLGRDPEMRYTASGEAICNFSIACTDSWKDKQTGEKKEQTEWVRISFFGKLAEICGQYLKKGSQVYIEG
SLRTRKWTDKDGQERYTTEIRGDEMKMLGSRQGMGAPASSGGGGGYDSEPTDYAPAPARNKPKPSFDDLGDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=568513 KI612_RS17660 WP_226441369.1 3699202..3699669(-) (ssb) [Quatrionicoccus australiensis strain D9]
ATGGCTTCGGTTAATAAATGGATCGGTATCGGTAATTTGGGTCGCGACCCGGAGATGCGCTATACGGCCAGCGGCGAGGC
AATCTGCAATTTCAGCATTGCCTGCACGGATAGCTGGAAGGACAAGCAGACCGGCGAAAAGAAGGAGCAGACGGAATGGG
TCCGCATTTCCTTCTTCGGCAAGCTGGCTGAAATCTGCGGCCAGTACCTGAAAAAGGGCTCGCAGGTTTATATCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGATGGCCAGGAACGCTACACCACCGAAATCCGCGGTGACGAGATGAAAAT
GCTCGGCTCGCGTCAAGGCATGGGTGCGCCGGCGTCTTCCGGTGGCGGTGGTGGTTACGACAGCGAGCCGACCGATTACG
CCCCGGCCCCGGCCCGCAACAAGCCGAAACCTTCGTTCGATGATCTGGGTGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.619

100

0.568
  ssb Glaesserella parasuis strain SC1401

47.541

100

0.561
  ssb Neisseria meningitidis MC58

45.714

100

0.516
  ssb Neisseria gonorrhoeae MS11

45.714

100

0.516