Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI615_RS18840 Genome accession   NZ_CP075186
Coordinates   3982196..3982666 (-) Length   156 a.a.
NCBI ID   WP_226471637.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain G6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3977196..3987666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI615_RS18820 (KI615_18765) purT 3977433..3978632 (+) 1200 WP_226417173.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  KI615_RS18825 (KI615_18770) - 3978722..3979210 (+) 489 WP_226417174.1 adenylyltransferase/cytidyltransferase family protein -
  KI615_RS18830 (KI615_18775) - 3979274..3981169 (-) 1896 WP_226417175.1 potassium transporter Kup -
  KI615_RS18835 (KI615_18780) - 3981255..3982103 (-) 849 WP_226417176.1 HDOD domain-containing protein -
  KI615_RS18840 (KI615_18785) ssb 3982196..3982666 (-) 471 WP_226471637.1 single-stranded DNA-binding protein Machinery gene
  KI615_RS18845 (KI615_18790) - 3982679..3983866 (-) 1188 WP_226417178.1 MFS transporter -
  KI615_RS18850 (KI615_18795) - 3984091..3984534 (-) 444 WP_226417179.1 hypothetical protein -
  KI615_RS18855 (KI615_18800) uvrA 3984823..3987648 (+) 2826 WP_226417187.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17004.01 Da        Isoelectric Point: 5.9641

>NTDB_id=568466 KI615_RS18840 WP_226471637.1 3982196..3982666(-) (ssb) [Dechloromonas denitrificans strain G6]
MASVNKAIILGNLGKDPEVRYTASGEAMCNITVATSENWKDKATGEKKELTEWHRISFFGKLAEICGQYLKKGSQVYVEG
SIRTRKWTDKDGQERYTTEIRGDEMKMLGSRQGMGGPSSAGGGGGGYDNEPTDYAPAPAKNKPKPSFDDLGDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=568466 KI615_RS18840 WP_226471637.1 3982196..3982666(-) (ssb) [Dechloromonas denitrificans strain G6]
ATGGCATCGGTTAACAAGGCAATCATTCTCGGCAATCTGGGTAAAGACCCGGAAGTCCGTTACACGGCAAGCGGCGAAGC
GATGTGCAACATCACGGTAGCGACCAGCGAGAACTGGAAAGACAAGGCGACCGGCGAAAAGAAGGAACTGACCGAATGGC
ATCGCATTTCCTTCTTCGGCAAGCTGGCCGAAATCTGCGGCCAGTACCTGAAAAAAGGCTCGCAAGTCTATGTCGAGGGC
AGCATCCGCACCCGCAAATGGACCGACAAGGATGGCCAGGAACGTTACACCACCGAGATTCGCGGTGACGAAATGAAGAT
GCTCGGCTCCCGGCAGGGCATGGGCGGCCCGTCTTCCGCTGGCGGCGGTGGTGGCGGTTACGACAACGAGCCGACCGATT
ACGCGCCGGCTCCGGCCAAGAACAAGCCGAAGCCGTCGTTCGACGATCTCGGCGACGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.111

100

0.59
  ssb Glaesserella parasuis strain SC1401

48.087

100

0.564
  ssb Neisseria meningitidis MC58

46.552

100

0.519
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.519