Detailed information NTG0568465

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KI615_RS18075
• Genome accession: NZ_CP075186
• Coordinates: 3817653..3818501 (+)
• Length: 282 a.a.
• NCBI ID: WP_226417034.1
• Uniprot ID: -
• Organism: Dechloromonas denitrificans strain G6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3812653..3823501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI615_RS18060 (KI615_18005)	-	3813349..3814620 (+)	1272	WP_226471541.1	HlyC/CorC family transporter	-
KI615_RS18065 (KI615_18010)	pilB	3814697..3816412 (+)	1716	WP_226471542.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KI615_RS18070 (KI615_18015)	pilC	3816427..3817653 (+)	1227	WP_226417033.1	type II secretion system F family protein	Machinery gene
KI615_RS18075 (KI615_18020)	pilD	3817653..3818501 (+)	849	WP_226417034.1	prepilin peptidase	Machinery gene
KI615_RS18080 (KI615_18025)	-	3818572..3818835 (+)	264	WP_226417035.1	FmdB family zinc ribbon protein	-
KI615_RS18085 (KI615_18030)	-	3818835..3819449 (+)	615	WP_226419944.1	DUF502 domain-containing protein	-
KI615_RS18090 (KI615_18035)	aspS	3819467..3821269 (+)	1803	WP_226417036.1	aspartate--tRNA ligase	-
KI615_RS18095 (KI615_18040)	-	3821275..3821637 (+)	363	WP_226471543.1	ribonuclease domain-containing protein	-
KI615_RS18100 (KI615_18045)	-	3821650..3822078 (+)	429	WP_226471544.1	barstar family protein	-
KI615_RS18105 (KI615_18050)	nudB	3822075..3822527 (+)	453	WP_226471545.1	dihydroneopterin triphosphate diphosphatase	-
KI615_RS18110 (KI615_18055)	-	3822596..3823012 (+)	417	WP_226471546.1	Hsp20/alpha crystallin family protein	-

Sequence

Protein

• Length: 282 a.a.
• Molecular weight: 29823.44 Da
• Isoelectric Point: 7.9549

>NTDB_id=568465 KI615_RS18075 WP_226417034.1 3817653..3818501(+) (pilD) [Dechloromonas denitrificans strain G6]
MLPESLGGLAAMAGLLGLCVGSFLNVVIHRLPKMMEQEWQAQCADLRGEPAPTAAALSLAKPRSRCPACGHSITAFENIP
VLSYLLLRGKCSGCNAAISFRYPLIELLTGLLSAYAAWHFGPTIQTVGALALLWSLIALAAIDLDTQLLPDSITLPMLWL
GLAFNIATTYVDLQSAVIGAMAGYLALWSVFWLFKLATGKEGMGYGDFKLLAALGAWLGWSMLPAIILLSSVVGAIVGIS
LIVAARHGRNVPIPFGPYLAAAGGIALFWGPQLTRSYLGLLA

Nucleotide

• Length: 849 bp

>NTDB_id=568465 KI615_RS18075 WP_226417034.1 3817653..3818501(+) (pilD) [Dechloromonas denitrificans strain G6]
ATGCTTCCTGAATCACTGGGCGGCTTGGCTGCCATGGCTGGGCTGCTCGGTTTGTGCGTCGGCAGTTTTCTCAATGTGGT
CATTCATCGCCTGCCCAAGATGATGGAACAGGAGTGGCAGGCTCAATGCGCCGATTTACGGGGTGAGCCTGCGCCGACTG
CGGCAGCGTTGTCGCTGGCCAAGCCGCGCTCCCGCTGTCCGGCTTGCGGACACTCGATTACAGCATTTGAAAACATTCCT
GTCCTAAGTTATCTGTTGCTGCGCGGCAAATGCTCTGGCTGCAACGCCGCGATTTCCTTTCGTTACCCCCTGATCGAACT
TCTGACCGGCCTGTTATCGGCTTACGCGGCTTGGCATTTCGGACCGACGATACAGACGGTCGGTGCGCTGGCTCTGCTCT
GGTCACTGATTGCCCTTGCCGCTATCGACCTCGATACCCAATTGCTCCCCGACAGCATCACGCTCCCTATGCTCTGGCTG
GGCCTGGCCTTCAACATTGCCACCACCTATGTCGACCTTCAGTCTGCCGTGATTGGCGCCATGGCTGGCTATCTCGCGCT
GTGGTCGGTATTCTGGCTATTCAAGCTGGCGACCGGAAAGGAAGGCATGGGCTATGGCGACTTCAAGTTGCTGGCTGCGC
TCGGTGCCTGGCTGGGCTGGTCGATGCTGCCTGCCATCATCCTGCTCTCCTCGGTGGTCGGTGCGATTGTCGGCATCAGC
CTGATCGTTGCCGCCCGCCATGGCCGCAACGTACCGATTCCGTTCGGCCCCTACCTTGCCGCCGCTGGCGGCATTGCCCT
GTTTTGGGGGCCGCAGTTGACCCGCAGCTATCTCGGTTTGCTCGCTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-120)

• Type IV leader peptidase family (Peptidase_A24) (131-239)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.827	96.099	0.546
pilD	Vibrio campbellii strain DS40M4	56.41	96.809	0.546
pilD	Acinetobacter baumannii D1279779	54.317	98.582	0.535
pilD	Acinetobacter nosocomialis M2	53.597	98.582	0.528
pilD	Neisseria gonorrhoeae MS11	52.734	90.78	0.479