Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI611_RS18795 Genome accession   NZ_CP075185
Coordinates   3935789..3936256 (-) Length   155 a.a.
NCBI ID   WP_226417177.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain 110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3930789..3941256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI611_RS18775 (KI611_18730) purT 3931026..3932225 (+) 1200 WP_226417173.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  KI611_RS18780 (KI611_18735) - 3932315..3932803 (+) 489 WP_226417174.1 adenylyltransferase/cytidyltransferase family protein -
  KI611_RS18785 (KI611_18740) - 3932867..3934762 (-) 1896 WP_226417175.1 potassium transporter Kup -
  KI611_RS18790 (KI611_18745) - 3934848..3935696 (-) 849 WP_226417176.1 HDOD domain-containing protein -
  KI611_RS18795 (KI611_18750) ssb 3935789..3936256 (-) 468 WP_226417177.1 single-stranded DNA-binding protein Machinery gene
  KI611_RS18800 (KI611_18755) - 3936269..3937456 (-) 1188 WP_226417178.1 MFS transporter -
  KI611_RS18805 (KI611_18760) - 3937681..3938124 (-) 444 WP_226417179.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16932.93 Da        Isoelectric Point: 5.9641

>NTDB_id=568443 KI611_RS18795 WP_226417177.1 3935789..3936256(-) (ssb) [Dechloromonas denitrificans strain 110]
MASVNKAIILGNLGKDPEVRYTASGEAMCNITVATSENWKDKATGEKKELTEWHRISFFGKLAEICGQYLKKGSQVYVEG
SIRTRKWTDKDGQERYTTEIRGDEMKMLGSRQGMGGPSSGGGGGGYDNEPTDYAPAPAKNKPKPSFDDLGDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=568443 KI611_RS18795 WP_226417177.1 3935789..3936256(-) (ssb) [Dechloromonas denitrificans strain 110]
ATGGCATCGGTTAACAAGGCAATCATCCTCGGCAATCTGGGTAAAGACCCGGAAGTCCGTTACACGGCAAGCGGCGAAGC
GATGTGCAACATCACGGTAGCGACCAGCGAGAACTGGAAAGACAAGGCGACCGGCGAAAAGAAGGAACTGACCGAATGGC
ATCGCATTTCCTTCTTCGGCAAGCTGGCCGAAATCTGCGGCCAGTACCTGAAAAAAGGCTCGCAAGTCTATGTCGAGGGC
AGCATCCGCACCCGCAAATGGACCGACAAGGATGGCCAGGAACGTTACACCACCGAGATTCGCGGTGACGAAATGAAGAT
GCTCGGCTCCCGGCAGGGCATGGGCGGCCCGTCTTCCGGCGGCGGTGGTGGCGGTTACGACAACGAGCCGACCGATTACG
CGCCGGCTCCGGCCAAGAACAAGCCGAAGCCGTCGTTTGACGATCTTGGCGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.667

100

0.6
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.561
  ssb Neisseria meningitidis MC58

47.126

100

0.529
  ssb Neisseria gonorrhoeae MS11

45.714

100

0.516