Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   MK801_RS09500 Genome accession   NZ_CP092748
Coordinates   1893992..1895434 (+) Length   480 a.a.
NCBI ID   WP_254255520.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888992..1900434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS09465 (MK801_09460) - 1889196..1889387 (+) 192 WP_012897234.1 hypothetical protein -
  MK801_RS09470 (MK801_09465) rsmI 1889464..1890339 (-) 876 WP_010905318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MK801_RS09475 (MK801_09470) yabA 1890339..1890665 (-) 327 WP_015425850.1 DNA replication initiation control protein YabA -
  MK801_RS09480 (MK801_09475) yaaT 1890658..1891440 (-) 783 WP_057719678.1 stage 0 sporulation family protein Regulator
  MK801_RS09485 (MK801_09480) - 1891492..1892352 (-) 861 WP_057719679.1 DNA polymerase III subunit delta' -
  MK801_RS09490 (MK801_09485) tmk 1892485..1893120 (-) 636 WP_015425847.1 dTMP kinase -
  MK801_RS09495 (MK801_09490) yycF 1893298..1893999 (+) 702 WP_003131580.1 response regulator YycF -
  MK801_RS09500 (MK801_09495) vicK 1893992..1895434 (+) 1443 WP_254255520.1 ATP-binding protein Regulator
  MK801_RS09505 (MK801_09500) vicX 1895604..1896416 (+) 813 WP_254255521.1 MBL fold metallo-hydrolase Regulator
  MK801_RS09510 (MK801_09505) groL 1896463..1898091 (-) 1629 WP_015425845.1 chaperonin GroEL -
  MK801_RS09515 (MK801_09510) groES 1898179..1898463 (-) 285 WP_003131589.1 co-chaperone GroES -
  MK801_RS09520 (MK801_09515) - 1898583..1898972 (-) 390 WP_015425843.1 single-stranded DNA-binding protein -
  MK801_RS09525 (MK801_09520) nox 1899062..1900402 (-) 1341 WP_057719681.1 H2O-forming NADH oxidase -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54606.97 Da        Isoelectric Point: 4.5536

>NTDB_id=568066 MK801_RS09500 WP_254255520.1 1893992..1895434(+) (vicK) [Lactococcus lactis strain 17M1]
MIKFFNSMIFKGVVAHLLLFVILFMSSFDYNFAHLSTFIGYYLFSLVFVLVFLNQQHRMIVNVSKQMNDIKNGYLNRDKI
PKGTSEINELYDEILKLGEDIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQKNIVE
VLKISDQYNFYDLLEKEPEITIETQDAGNESISLHIKFALFRRESGFISGIIAVLHDMTEQDKAERERHLFVSNVSHELR
TPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKETINLIAFLDYQINRLDQIL
ETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDL
LKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLPYSLEAADDWDDGTDEFEFEDNE

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=568066 MK801_RS09500 WP_254255520.1 1893992..1895434(+) (vicK) [Lactococcus lactis strain 17M1]
ATGATTAAATTTTTTAATTCAATGATTTTTAAAGGAGTAGTTGCACACCTACTTCTTTTTGTCATCCTTTTTATGAGCAG
TTTTGATTACAATTTTGCTCATTTAAGTACTTTTATTGGTTATTACTTATTTTCACTCGTCTTTGTTTTAGTCTTTCTCA
ATCAGCAACATCGCATGATTGTGAATGTTTCTAAACAGATGAATGACATAAAAAATGGCTATTTAAATCGTGATAAAATC
CCAAAAGGGACGAGTGAAATCAATGAATTATACGATGAAATTTTAAAACTTGGTGAAGATATTGTTCGCACACAGAACAA
TCTTGAAAATCAGCGTAATCAATTAGATAGTATCCTCGCATATATGGTTGATGGCGTCATTGCCACCGACCGGCGCGGAA
ATATTATTATGGCCAATAAATCAGCTTTGCACTATTTGAATACAGATAATGATCTCTTGATGCAAAAAAATATTGTTGAA
GTCTTAAAAATTTCTGACCAATATAATTTTTATGATTTATTAGAAAAAGAACCTGAAATAACTATTGAGACACAGGATGC
TGGGAATGAATCCATTTCGCTCCACATTAAATTTGCCCTCTTTCGTCGTGAATCTGGTTTCATCTCAGGAATTATTGCCG
TTTTACATGATATGACTGAACAAGATAAGGCCGAACGAGAGCGCCATCTCTTTGTTTCCAATGTTTCTCATGAACTCCGA
ACTCCGCTCACCTCAGTAAAAGCCTACTTGGAAGCACTAGAAGACGGAGCTATTGAGGATAAAGAAACAGCTTCATCCTT
TATTAATGTTTCACTTACTGAAACTAATCGGATGATTCGAATGATTTCCGACCTTTTGACTTTATCAAGAATGGATCAAG
ACCGAATCGTTCTTAATAAAGAAACGATTAATTTAATTGCCTTCTTAGACTATCAAATTAACCGTTTAGACCAAATTTTA
GAAACCGAATCAAACGATTTAATCTCTTCTAATTTCACTCTAGTCAGAAAATACTCTGAACAGCCCATCTGGGTCGAAAT
TGATACCGATAAAATTGCTCAAGTCATTGACAATATCATCGGAAATGCAATTAAGTATTCACCTAAAGGTGGAACTATTA
CAATTTCCGTTGAAAAACGTGAAAGTGATGTTCTAATCTCCATCAGTGACCAAGGAATGGGGATTCCAAAATCTGATTTA
CTTAAAATTTTTGACCGTTTCTACCGAGTTGATAATGCTTCAAGAAATTCAAAAGTTGGAGGAACAGGTTTAGGCCTCTC
TATTGTCCATGATATTGTTAAAATACATGGCGGAACAATTTTTGCAAGTTCTGAAGGAGAAGGAAAAGGAACTACCTTTA
GTTTCACTCTTCCATATTCTTTAGAAGCCGCAGATGACTGGGATGATGGCACTGATGAGTTTGAATTTGAGGATAATGAA
TAA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(230-293)

PAS domain (PAS_9)

(124-220)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

51.319

86.875

0.446
  micB Streptococcus pneumoniae Cp1015

47.748

92.5

0.442