Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   MK801_RS09505 Genome accession   NZ_CP092748
Coordinates   1895604..1896416 (+) Length   270 a.a.
NCBI ID   WP_254255521.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1890604..1901416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS09480 (MK801_09475) yaaT 1890658..1891440 (-) 783 WP_057719678.1 stage 0 sporulation family protein Regulator
  MK801_RS09485 (MK801_09480) - 1891492..1892352 (-) 861 WP_057719679.1 DNA polymerase III subunit delta' -
  MK801_RS09490 (MK801_09485) tmk 1892485..1893120 (-) 636 WP_015425847.1 dTMP kinase -
  MK801_RS09495 (MK801_09490) yycF 1893298..1893999 (+) 702 WP_003131580.1 response regulator YycF -
  MK801_RS09500 (MK801_09495) vicK 1893992..1895434 (+) 1443 WP_254255520.1 ATP-binding protein Regulator
  MK801_RS09505 (MK801_09500) vicX 1895604..1896416 (+) 813 WP_254255521.1 MBL fold metallo-hydrolase Regulator
  MK801_RS09510 (MK801_09505) groL 1896463..1898091 (-) 1629 WP_015425845.1 chaperonin GroEL -
  MK801_RS09515 (MK801_09510) groES 1898179..1898463 (-) 285 WP_003131589.1 co-chaperone GroES -
  MK801_RS09520 (MK801_09515) - 1898583..1898972 (-) 390 WP_015425843.1 single-stranded DNA-binding protein -
  MK801_RS09525 (MK801_09520) nox 1899062..1900402 (-) 1341 WP_057719681.1 H2O-forming NADH oxidase -
  MK801_RS09530 (MK801_09525) ytpR 1900564..1901190 (-) 627 WP_254255522.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30556.39 Da        Isoelectric Point: 5.8494

>NTDB_id=568067 MK801_RS09505 WP_254255521.1 1895604..1896416(+) (vicX) [Lactococcus lactis strain 17M1]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHFTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=568067 MK801_RS09505 WP_254255521.1 1895604..1896416(+) (vicX) [Lactococcus lactis strain 17M1]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAGAAAATTCTTGTTGATGCCGGGCTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GCAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATTTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACTAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685