Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MK801_RS06685 Genome accession   NZ_CP092748
Coordinates   1316663..1317340 (-) Length   225 a.a.
NCBI ID   WP_128267885.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1311663..1322340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS06660 (MK801_06655) - 1311824..1312477 (+) 654 WP_046124391.1 redox-sensing transcriptional repressor Rex -
  MK801_RS12050 - 1313295..1313423 (-) 129 WP_264464017.1 hypothetical protein -
  MK801_RS06665 (MK801_06660) - 1313497..1314924 (-) 1428 WP_227149709.1 hypothetical protein -
  MK801_RS06675 (MK801_06670) - 1315288..1315443 (-) 156 Protein_1293 LysM domain-containing protein -
  MK801_RS06680 (MK801_06675) - 1315520..1316677 (+) 1158 Protein_1294 IS3-like element IS-LL6 family transposase -
  MK801_RS06685 (MK801_06680) radC 1316663..1317340 (-) 678 WP_128267885.1 DNA repair protein RadC Machinery gene
  MK801_RS06690 (MK801_06685) glmS 1317471..1319288 (-) 1818 WP_057720646.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  MK801_RS06695 (MK801_06690) - 1319469..1320125 (-) 657 WP_057720647.1 phosphatase PAP2 family protein -
  MK801_RS06700 (MK801_06695) - 1320132..1321457 (-) 1326 WP_057720648.1 cell wall metabolism sensor histidine kinase WalK -
  MK801_RS06705 (MK801_06700) - 1321461..1321967 (-) 507 WP_225513343.1 DUF2127 domain-containing protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25635.45 Da        Isoelectric Point: 7.9252

>NTDB_id=568051 MK801_RS06685 WP_128267885.1 1316663..1317340(-) (radC) [Lactococcus lactis strain 17M1]
MYELRENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLRPSQADKIFTDKIKKSCEDVGINFIDHIIVGAGNWTNVKYLDTK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=568051 MK801_RS06685 WP_128267885.1 1316663..1317340(-) (radC) [Lactococcus lactis strain 17M1]
ATGTATGAACTAAGAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAGTATGGCCTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTACGACCCAGTCAGGCTGA
TAAAATATTTACTGACAAAATAAAAAAATCTTGTGAGGATGTGGGGATCAATTTTATTGACCATATTATTGTAGGGGCTG
GTAATTGGACTAATGTCAAATATTTAGACACAAAATGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-80)

RadC-like JAB domain (RadC)

(115-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

44.907

96

0.431
  radC Streptococcus pneumoniae R6

44.907

96

0.431
  radC Streptococcus pneumoniae D39

44.907

96

0.431
  radC Streptococcus gordonii str. Challis substr. CH1

44.444

96

0.427
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40

97.778

0.391