Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AVFI_RS11960 Genome accession   NZ_CP092712
Coordinates   2616738..2617370 (+) Length   210 a.a.
NCBI ID   WP_005421074.1    Uniprot ID   Q5E2H1
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2611738..2622370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS11935 (AVFI_11935) cytR 2612194..2613201 (+) 1008 WP_012533023.1 DNA-binding transcriptional regulator CytR Regulator
  AVFI_RS11940 (AVFI_11940) - 2613373..2613948 (+) 576 WP_017019998.1 SPOR domain-containing protein -
  AVFI_RS11945 (AVFI_11945) hslV 2614128..2614652 (+) 525 WP_005421069.1 ATP-dependent protease subunit HslV -
  AVFI_RS11950 (AVFI_11950) hslU 2614672..2616006 (+) 1335 WP_005421071.1 HslU--HslV peptidase ATPase subunit -
  AVFI_RS11955 (AVFI_11955) - 2616088..2616492 (-) 405 WP_012534317.1 OsmC family protein -
  AVFI_RS11960 (AVFI_11960) crp 2616738..2617370 (+) 633 WP_005421074.1 cAMP-activated global transcriptional regulator CRP Regulator
  AVFI_RS11965 (AVFI_11965) - 2617444..2618238 (-) 795 WP_188863412.1 DUF1338 domain-containing protein -
  AVFI_RS11970 (AVFI_11970) astD 2618250..2619707 (-) 1458 WP_065597672.1 succinylglutamate-semialdehyde dehydrogenase -
  AVFI_RS11975 (AVFI_11975) astA 2619720..2620736 (-) 1017 WP_155661802.1 arginine N-succinyltransferase -
  AVFI_RS11980 (AVFI_11980) - 2620804..2622018 (-) 1215 WP_017019996.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23552.36 Da        Isoelectric Point: 7.8387

>NTDB_id=567977 AVFI_RS11960 WP_005421074.1 2616738..2617370(+) (crp) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMATRLQITSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=567977 AVFI_RS11960 WP_005421074.1 2616738..2617370(+) (crp) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGGTTCTAGGTAAACCTCAAACAGATCCAACATTAGAGTGGTTCTTGTCTCACTGTCACATTCATAAGTACCCTTCAAA
GAGCACGCTAATTCACGCGGGTGAAAAAGCGGAAACTCTTTACTACATTGTAAAAGGTTCTGTTGCTGTACTTATCAAAG
ATGAAGAAGGTAAAGAAATGATCCTTTCTTACCTAAACCAAGGTGACTTCATTGGTGAGCTTGGCTTATTTGAAGAAGGT
CAAGAGCGTTCAGCGTGGGTTCGTGCGAAAAGCCCTTGTGAAGTAGCAGAAATTTCATTCAAGAAATTCCGCCAACTTAT
CCAAGTTAACCCAGATATCCTAATGCGTCTTTCTGCGCAAATGGCAACTCGTTTACAAATCACTAGCCAAAAAGTAGGTG
ACTTAGCATTCCTAGACGTAACAGGCCGTATCGCTCAAACGCTACTAAACCTTGCTAAACAACCTGATGCAATGACTCAC
CCAGACGGCATGCAAATTAAGATCACTCGTCAAGAGATCGGTCAAATTGTTGGTTGTTCACGTGAAACTGTTGGCCGTAT
CTTAAAGATGCTTGAAGAGCAAAACCTGATTTCAGCGCACGGCAAAACAATTGTAGTTTACGGTACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E2H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75.98

97.143

0.738
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462