Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AVFI_RS11935 Genome accession   NZ_CP092712
Coordinates   2612194..2613201 (+) Length   335 a.a.
NCBI ID   WP_012533023.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2607194..2618201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS11920 (AVFI_11920) - 2607828..2609076 (-) 1249 Protein_2283 malic enzyme-like NAD(P)-binding protein -
  AVFI_RS11925 (AVFI_11925) rpmE 2609342..2609560 (-) 219 WP_005421061.1 50S ribosomal protein L31 -
  AVFI_RS11930 (AVFI_11930) priA 2609800..2612001 (+) 2202 WP_012533325.1 primosomal protein N' Machinery gene
  AVFI_RS11935 (AVFI_11935) cytR 2612194..2613201 (+) 1008 WP_012533023.1 DNA-binding transcriptional regulator CytR Regulator
  AVFI_RS11940 (AVFI_11940) - 2613373..2613948 (+) 576 WP_017019998.1 SPOR domain-containing protein -
  AVFI_RS11945 (AVFI_11945) hslV 2614128..2614652 (+) 525 WP_005421069.1 ATP-dependent protease subunit HslV -
  AVFI_RS11950 (AVFI_11950) hslU 2614672..2616006 (+) 1335 WP_005421071.1 HslU--HslV peptidase ATPase subunit -
  AVFI_RS11955 (AVFI_11955) - 2616088..2616492 (-) 405 WP_012534317.1 OsmC family protein -
  AVFI_RS11960 (AVFI_11960) crp 2616738..2617370 (+) 633 WP_005421074.1 cAMP-activated global transcriptional regulator CRP Regulator

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36949.29 Da        Isoelectric Point: 6.4948

>NTDB_id=567976 AVFI_RS11935 WP_012533023.1 2612194..2613201(+) (cytR) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MATMKDVALSAGVSTATVSRALMTPEKVSLSTRKRVEDAVLETGYSPTTLTRTLRRNESKTIVTIVPDICDPYFSDIIRG
IEDAAVENGYVILVGDSSQQKKREHSFVNLVYTKQVDGMVLLGSDLPFNVSRQEQKNLPPLVMACEYAPELELPTVHIDN
LTAAYEAVNYLTKLGHKNIAELSGPESSALCQFRHQGYQQALRRAGITMNASYVQYGDFTFEAGAKAITQLLSLSTPPTA
VFCHNDIMAIGAIQKAKQMGFRVPQDISIMGFDDIEFSQYCDPALTTISQPRYEIGRQSMLMLLELLKGHDVRSGSRLLE
SSLIVRESTASPKNK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=567976 AVFI_RS11935 WP_012533023.1 2612194..2613201(+) (cytR) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGGCGACAATGAAGGACGTTGCTTTATCGGCAGGAGTGTCAACAGCAACGGTATCACGAGCACTAATGACACCAGAAAA
AGTATCATTATCCACTCGTAAGCGCGTTGAAGATGCAGTATTAGAAACGGGTTACTCACCCACCACGTTAACTCGAACAT
TACGACGCAATGAATCAAAAACCATTGTGACGATTGTGCCTGACATTTGCGATCCTTACTTTAGCGATATCATTCGCGGC
ATTGAAGATGCAGCCGTTGAAAATGGTTATGTCATCTTAGTAGGCGATAGCAGTCAACAGAAAAAACGTGAACACTCCTT
TGTTAACCTTGTATACACCAAACAAGTCGACGGTATGGTATTACTTGGTTCAGACCTCCCTTTTAACGTTAGTCGCCAAG
AACAAAAAAATTTACCGCCTCTTGTGATGGCGTGTGAATATGCACCAGAATTAGAACTACCAACTGTTCATATCGATAAC
CTTACAGCAGCCTATGAAGCAGTTAACTACCTAACTAAACTAGGGCATAAAAACATCGCAGAATTATCTGGCCCTGAAAG
CTCCGCGCTCTGTCAGTTTCGACACCAAGGTTACCAGCAAGCACTTCGCCGAGCGGGTATCACCATGAATGCCTCTTATG
TTCAATATGGTGATTTCACTTTCGAAGCAGGTGCAAAAGCAATAACTCAACTTCTTTCTCTTTCAACGCCACCAACTGCC
GTCTTTTGTCATAACGATATTATGGCAATCGGAGCGATTCAAAAAGCGAAACAAATGGGCTTTAGAGTACCTCAAGACAT
TTCTATCATGGGATTTGATGATATTGAATTCTCTCAATATTGTGATCCAGCATTAACCACGATTTCGCAACCTCGTTATG
AAATTGGTCGTCAATCCATGTTGATGCTACTTGAATTATTAAAAGGCCATGATGTTCGTTCTGGCTCACGATTACTCGAA
TCATCATTAATCGTAAGAGAGAGTACGGCGTCCCCAAAAAACAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

78.507

100

0.785
  cytR Vibrio parahaemolyticus RIMD 2210633

76.276

99.403

0.758