Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AVFI_RS11930 Genome accession   NZ_CP092712
Coordinates   2609800..2612001 (+) Length   733 a.a.
NCBI ID   WP_012533325.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2604800..2617001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS11910 (AVFI_11910) - 2605510..2606853 (+) 1344 WP_012533801.1 carbohydrate porin -
  AVFI_RS11915 (AVFI_11915) - 2606927..2607754 (+) 828 WP_065604414.1 MalM family protein -
  AVFI_RS11920 (AVFI_11920) - 2607828..2609076 (-) 1249 Protein_2283 malic enzyme-like NAD(P)-binding protein -
  AVFI_RS11925 (AVFI_11925) rpmE 2609342..2609560 (-) 219 WP_005421061.1 50S ribosomal protein L31 -
  AVFI_RS11930 (AVFI_11930) priA 2609800..2612001 (+) 2202 WP_012533325.1 primosomal protein N' Machinery gene
  AVFI_RS11935 (AVFI_11935) cytR 2612194..2613201 (+) 1008 WP_012533023.1 DNA-binding transcriptional regulator CytR Regulator
  AVFI_RS11940 (AVFI_11940) - 2613373..2613948 (+) 576 WP_017019998.1 SPOR domain-containing protein -
  AVFI_RS11945 (AVFI_11945) hslV 2614128..2614652 (+) 525 WP_005421069.1 ATP-dependent protease subunit HslV -
  AVFI_RS11950 (AVFI_11950) hslU 2614672..2616006 (+) 1335 WP_005421071.1 HslU--HslV peptidase ATPase subunit -
  AVFI_RS11955 (AVFI_11955) - 2616088..2616492 (-) 405 WP_012534317.1 OsmC family protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82613.56 Da        Isoelectric Point: 8.3413

>NTDB_id=567975 AVFI_RS11930 WP_012533325.1 2609800..2612001(+) (priA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MPYSIAHVALPVPLDRTFDYLIKSEQKPVVGGRVKVPFGRQRLIGVVTKLSNESEFAREKLKAIDAVLDEQSLWPTNLYK
LLNWSSTYYQYPLGDTLANAMPSWLRKGREANFASLKAWQITELGKNQDLNKLTRAPKQAKALNLVRHQQCSHEQMLEEE
VTAATLKAISDKGWIEEISLAPTPSYWYRDVEVTQEKPQLNEEQSIAIATVNANHEFGCYLLEGVTGSGKTEVYLQLLEP
ILKAGRQALILVPEIGLTPQTINRFKRRFNVPVDVIHSGLNDTERLNAWLAARDNHAGIIIGTRSALFTPFHDLGIIIVD
EEHDASYKQQDSMRYHARDLAVMRANLDNIPIILGSATPALETLHNANVGKYHHLTLTKRAGTAIPARHGVLDVKGLYLN
SGLSAPLIAQMRKHLSEGNQVMLFLNRRGFSPALMCHECGWMAECKRCDAFYTFHQHSNEIRCHHCGSQQPIIHQCQGCG
STQLISVGVGTEQLETQLTNLFPEYKTVRIDRDSTRRKGSLEDYLEAIKNNEYQILIGTQMLAKGHHFPNVTLVGLIDVD
SSLFSSDFRAPERLAQLFIQVAGRAGRASKPGEVILQTHHPEHSLLQSLLHHGYGHFAEHALKERKFAQLPPYTHLSLFR
AEANNNENVEQFLRQVRDILESHPQFHDATPVLGPIPAPLARRAGKYRWQLLFQAPNRTVMQSMLRGAKTAIELLPLAKK
VRWTLDIEPQDLS

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=567975 AVFI_RS11930 WP_012533325.1 2609800..2612001(+) (priA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGCCCTATTCAATCGCTCATGTTGCACTGCCTGTTCCACTTGATCGCACCTTTGATTATCTTATTAAATCAGAGCAAAA
ACCTGTGGTCGGTGGGCGAGTAAAAGTCCCTTTTGGGCGTCAGCGTTTAATTGGTGTGGTAACAAAACTTAGCAATGAAT
CTGAGTTTGCTCGTGAAAAATTAAAAGCCATTGATGCGGTGCTTGATGAGCAAAGTTTATGGCCAACTAATCTATACAAA
TTATTAAATTGGAGCAGCACGTATTATCAGTATCCATTAGGGGATACGTTGGCAAATGCGATGCCGTCATGGTTAAGAAA
AGGAAGAGAAGCCAATTTTGCTTCGTTAAAAGCTTGGCAAATTACCGAGCTTGGTAAAAATCAAGATTTAAATAAGCTAA
CACGAGCTCCAAAACAAGCCAAAGCACTCAATTTAGTAAGACATCAACAATGCAGTCATGAGCAAATGCTTGAAGAAGAA
GTGACTGCTGCCACACTAAAAGCGATTTCAGATAAAGGTTGGATTGAAGAGATATCCCTTGCTCCGACACCAAGCTACTG
GTATCGAGATGTTGAAGTCACTCAAGAGAAACCTCAACTCAATGAAGAGCAATCTATCGCTATTGCTACGGTCAATGCAA
ATCATGAATTTGGTTGTTATCTGTTGGAAGGGGTTACGGGTTCAGGAAAAACTGAAGTCTATTTACAGCTTCTAGAACCG
ATTTTAAAAGCTGGACGACAAGCGCTTATCTTGGTTCCTGAAATTGGTTTAACTCCACAAACCATTAATCGTTTTAAGCG
TCGCTTTAATGTACCTGTTGATGTTATTCATTCAGGACTTAATGACACTGAGCGTTTAAATGCATGGTTAGCAGCAAGGG
ATAATCACGCCGGTATCATCATTGGTACTCGTTCGGCTCTGTTTACGCCTTTTCATGATTTAGGGATCATCATTGTTGAT
GAAGAACATGATGCCTCTTATAAGCAACAAGACAGCATGAGATATCATGCGCGCGATTTAGCCGTGATGAGAGCCAACTT
AGATAACATCCCTATTATTCTGGGTTCAGCAACCCCTGCGTTAGAAACATTACACAATGCGAATGTTGGAAAATATCATC
ACCTAACACTAACCAAACGCGCAGGTACTGCCATTCCTGCTCGCCATGGTGTTCTTGATGTAAAAGGCTTATATCTTAAC
AGCGGCCTATCTGCCCCTTTAATTGCTCAAATGAGAAAACACTTATCTGAGGGCAATCAGGTCATGCTGTTTTTAAACCG
CAGAGGCTTTTCACCTGCATTAATGTGTCATGAATGCGGTTGGATGGCTGAATGTAAACGTTGCGATGCTTTCTATACTT
TCCATCAACACTCAAATGAAATTCGTTGTCACCACTGTGGTTCACAACAGCCCATTATTCATCAATGTCAAGGGTGCGGA
TCGACACAATTAATTTCTGTCGGTGTAGGTACAGAACAACTAGAAACACAATTAACCAATCTATTTCCTGAGTACAAAAC
GGTACGTATTGATAGAGATAGCACTCGTCGTAAAGGTAGCTTAGAAGACTATTTAGAAGCGATTAAGAACAATGAATACC
AAATTTTAATTGGTACTCAAATGCTAGCAAAAGGCCACCATTTTCCTAACGTTACTTTGGTTGGATTAATCGACGTAGAC
AGCTCTCTGTTTAGTAGTGATTTTCGAGCGCCTGAAAGATTAGCTCAATTATTTATTCAGGTTGCAGGGCGTGCAGGACG
TGCAAGTAAACCAGGTGAAGTAATTTTGCAAACTCACCACCCTGAGCACTCACTACTACAAAGCTTATTACATCATGGTT
ATGGGCATTTTGCAGAGCACGCTTTAAAAGAACGTAAATTTGCTCAATTACCACCTTATACCCATTTATCTCTTTTTAGA
GCAGAAGCAAATAATAACGAAAACGTGGAACAATTCTTACGACAAGTACGTGATATTTTAGAAAGCCACCCACAATTTCA
TGATGCAACACCAGTACTTGGGCCGATCCCCGCACCATTAGCCCGTCGTGCAGGTAAATACCGCTGGCAACTATTATTCC
AAGCACCAAACCGCACGGTAATGCAATCAATGCTTCGTGGTGCAAAAACCGCCATCGAACTTTTACCTCTAGCAAAAAAA
GTTCGATGGACTTTAGATATTGAGCCGCAAGATTTAAGTTAA

Domains

Predicted by InterProScan.

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)

3DNA-binding domain (3BD) (PriA_3primeBD)

(8-102)

Helicase conserved C-terminal domain (Helicase_C)

(513-588)

DEAD/DEAH box helicase (DEAD)

(216-364)

Primosomal protein N C-terminal domain (PriA_C)

(632-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

43.631

100

0.439