Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H4F95_RS11695 Genome accession   NZ_CP075061
Coordinates   1824244..1824873 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain TCM_B_2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1819244..1829873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4F95_RS11675 (H4F95_11675) ycbZ 1819633..1821393 (-) 1761 WP_000156526.1 Lon protease family protein -
  H4F95_RS11680 (H4F95_11680) matP 1821579..1822031 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H4F95_RS11685 (H4F95_11685) ompA 1822107..1823159 (-) 1053 WP_000750419.1 porin OmpA -
  H4F95_RS11690 (H4F95_11690) sulA 1823516..1824025 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H4F95_RS11695 (H4F95_11695) sxy/tfoX 1824244..1824873 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H4F95_RS11700 (H4F95_11700) yccS 1824836..1826998 (-) 2163 WP_000875015.1 YccS family putative transporter -
  H4F95_RS11705 (H4F95_11705) yccF 1827008..1827454 (-) 447 WP_001261235.1 YccF domain-containing protein -
  H4F95_RS11710 (H4F95_11710) helD 1827577..1829631 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=567595 H4F95_RS11695 WP_000839153.1 1824244..1824873(+) (sxy/tfoX) [Escherichia coli strain TCM_B_2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=567595 H4F95_RS11695 WP_000839153.1 1824244..1824873(+) (sxy/tfoX) [Escherichia coli strain TCM_B_2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1