Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KIV12_RS12850 Genome accession   NZ_CP075052
Coordinates   2526098..2526478 (-) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain LZP 02     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2521098..2531478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS12815 (KIV12_12815) - 2521693..2521923 (-) 231 WP_039167715.1 DUF896 domain-containing protein -
  KIV12_RS12820 (KIV12_12820) - 2521993..2522640 (-) 648 WP_144665494.1 recombinase family protein -
  KIV12_RS12825 (KIV12_12825) yneA 2522658..2522969 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  KIV12_RS12830 (KIV12_12830) lexA 2523129..2523749 (+) 621 WP_007499350.1 transcriptional repressor LexA -
  KIV12_RS12835 (KIV12_12835) - 2523797..2524234 (-) 438 WP_057079489.1 hypothetical protein -
  KIV12_RS12840 (KIV12_12840) - 2524531..2525073 (+) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  KIV12_RS12845 (KIV12_12845) - 2525106..2525954 (-) 849 WP_017359585.1 STAS domain-containing protein -
  KIV12_RS12850 (KIV12_12850) nucA/comI 2526098..2526478 (-) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KIV12_RS12855 (KIV12_12855) - 2526706..2528700 (-) 1995 WP_217967112.1 glycosyltransferase family 39 protein -
  KIV12_RS12860 (KIV12_12860) - 2528847..2529755 (-) 909 WP_160757649.1 trypsin-like serine peptidase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=567413 KIV12_RS12850 WP_224559893.1 2526098..2526478(-) (nucA/comI) [Bacillus altitudinis strain LZP 02]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=567413 KIV12_RS12850 WP_224559893.1 2526098..2526478(-) (nucA/comI) [Bacillus altitudinis strain LZP 02]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556