Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KIV12_RS11470 Genome accession   NZ_CP075052
Coordinates   2255997..2256632 (-) Length   211 a.a.
NCBI ID   WP_100325377.1    Uniprot ID   -
Organism   Bacillus altitudinis strain LZP 02     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2250997..2261632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS11450 (KIV12_11450) - 2251358..2252062 (+) 705 WP_007500879.1 DnaD domain-containing protein -
  KIV12_RS11455 (KIV12_11455) nth 2252080..2252742 (+) 663 WP_008344602.1 endonuclease III -
  KIV12_RS11460 (KIV12_11460) - 2252739..2253248 (+) 510 WP_217967037.1 YpoC family protein -
  KIV12_RS11465 (KIV12_11465) - 2253284..2255977 (-) 2694 WP_217967038.1 PBP1A family penicillin-binding protein -
  KIV12_RS11470 (KIV12_11470) recU 2255997..2256632 (-) 636 WP_100325377.1 Holliday junction resolvase RecU Machinery gene
  KIV12_RS11475 (KIV12_11475) - 2256679..2257635 (+) 957 WP_017359732.1 DUF2515 domain-containing protein -
  KIV12_RS11480 (KIV12_11480) sspM 2257659..2257763 (-) 105 WP_017359731.1 acid-soluble spore protein SspM -
  KIV12_RS11485 (KIV12_11485) - 2257957..2258193 (+) 237 WP_024718530.1 DUF5446 family protein -
  KIV12_RS11490 (KIV12_11490) - 2258243..2258623 (+) 381 WP_225310452.1 YppE family protein -
  KIV12_RS11495 (KIV12_11495) - 2258732..2259184 (+) 453 WP_017359729.1 YppG family protein -
  KIV12_RS11500 (KIV12_11500) - 2259206..2259625 (-) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  KIV12_RS11505 (KIV12_11505) - 2259794..2260300 (+) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  KIV12_RS11510 (KIV12_11510) - 2260350..2261468 (-) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24262.44 Da        Isoelectric Point: 9.6582

>NTDB_id=567412 KIV12_RS11470 WP_100325377.1 2255997..2256632(-) (recU) [Bacillus altitudinis strain LZP 02]
MIRYPNGKSYQPIQQIGTKKRSSGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHSRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=567412 KIV12_RS11470 WP_100325377.1 2255997..2256632(-) (recU) [Bacillus altitudinis strain LZP 02]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAAGCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTCACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697