Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KIV12_RS10285 Genome accession   NZ_CP075052
Coordinates   2045927..2046220 (+) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain LZP 02     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2040927..2051220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS10255 (KIV12_10255) - 2041424..2041666 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  KIV12_RS10260 (KIV12_10260) - 2041879..2042259 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  KIV12_RS10270 (KIV12_10270) - 2042484..2043356 (+) 873 WP_217966995.1 STAS domain-containing protein -
  KIV12_RS10275 (KIV12_10275) comGA 2043819..2044889 (+) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  KIV12_RS10280 (KIV12_10280) comGB 2044870..2045910 (+) 1041 WP_024718840.1 competence type IV pilus assembly protein ComGB -
  KIV12_RS10285 (KIV12_10285) comGC 2045927..2046220 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  KIV12_RS10290 (KIV12_10290) comGD 2046213..2046659 (+) 447 WP_217966996.1 competence type IV pilus minor pilin ComGD -
  KIV12_RS10295 (KIV12_10295) comGE 2046643..2046957 (+) 315 WP_138278722.1 competence type IV pilus minor pilin ComGE -
  KIV12_RS10300 (KIV12_10300) comGF 2046899..2047396 (+) 498 WP_217966997.1 competence type IV pilus minor pilin ComGF -
  KIV12_RS10305 (KIV12_10305) - 2047393..2047776 (+) 384 WP_217966998.1 competence type IV pilus minor pilin ComGG -
  KIV12_RS10310 (KIV12_10310) - 2047837..2048031 (+) 195 WP_008342191.1 YqzE family protein -
  KIV12_RS10315 (KIV12_10315) - 2048066..2048392 (-) 327 WP_235701742.1 DUF3889 domain-containing protein -
  KIV12_RS10320 (KIV12_10320) tapA 2048645..2049172 (+) 528 WP_058336654.1 amyloid fiber anchoring/assembly protein TapA -
  KIV12_RS10325 (KIV12_10325) sipW 2049222..2049794 (+) 573 WP_058336655.1 signal peptidase I SipW -
  KIV12_RS10330 (KIV12_10330) tasA 2049853..2050653 (+) 801 WP_008342195.1 biofilm matrix protein TasA -
  KIV12_RS10335 (KIV12_10335) sinR 2050721..2051056 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=567408 KIV12_RS10285 WP_008342186.1 2045927..2046220(+) (comGC) [Bacillus altitudinis strain LZP 02]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=567408 KIV12_RS10285 WP_008342186.1 2045927..2046220(+) (comGC) [Bacillus altitudinis strain LZP 02]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAAGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392