Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   KIV12_RS10275 Genome accession   NZ_CP075052
Coordinates   2043819..2044889 (+) Length   356 a.a.
NCBI ID   WP_024718839.1    Uniprot ID   -
Organism   Bacillus altitudinis strain LZP 02     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2038819..2049889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS10240 (KIV12_10240) - 2040064..2040378 (+) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -
  KIV12_RS10245 (KIV12_10245) - 2040403..2040576 (-) 174 WP_003217333.1 DUF2759 domain-containing protein -
  KIV12_RS10250 (KIV12_10250) - 2040737..2041375 (+) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  KIV12_RS10255 (KIV12_10255) - 2041424..2041666 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  KIV12_RS10260 (KIV12_10260) - 2041879..2042259 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  KIV12_RS10270 (KIV12_10270) - 2042484..2043356 (+) 873 WP_217966995.1 STAS domain-containing protein -
  KIV12_RS10275 (KIV12_10275) comGA 2043819..2044889 (+) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  KIV12_RS10280 (KIV12_10280) comGB 2044870..2045910 (+) 1041 WP_024718840.1 competence type IV pilus assembly protein ComGB -
  KIV12_RS10285 (KIV12_10285) comGC 2045927..2046220 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  KIV12_RS10290 (KIV12_10290) comGD 2046213..2046659 (+) 447 WP_217966996.1 competence type IV pilus minor pilin ComGD -
  KIV12_RS10295 (KIV12_10295) comGE 2046643..2046957 (+) 315 WP_138278722.1 competence type IV pilus minor pilin ComGE -
  KIV12_RS10300 (KIV12_10300) comGF 2046899..2047396 (+) 498 WP_217966997.1 competence type IV pilus minor pilin ComGF -
  KIV12_RS10305 (KIV12_10305) - 2047393..2047776 (+) 384 WP_217966998.1 competence type IV pilus minor pilin ComGG -
  KIV12_RS10310 (KIV12_10310) - 2047837..2048031 (+) 195 WP_008342191.1 YqzE family protein -
  KIV12_RS10315 (KIV12_10315) - 2048066..2048392 (-) 327 WP_235701742.1 DUF3889 domain-containing protein -
  KIV12_RS10320 (KIV12_10320) tapA 2048645..2049172 (+) 528 WP_058336654.1 amyloid fiber anchoring/assembly protein TapA -
  KIV12_RS10325 (KIV12_10325) sipW 2049222..2049794 (+) 573 WP_058336655.1 signal peptidase I SipW -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40366.72 Da        Isoelectric Point: 9.0449

>NTDB_id=567407 KIV12_RS10275 WP_024718839.1 2043819..2044889(+) (comGA) [Bacillus altitudinis strain LZP 02]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=567407 KIV12_RS10275 WP_024718839.1 2043819..2044889(+) (comGA) [Bacillus altitudinis strain LZP 02]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGTTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTCAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTCG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACATTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACAATGAATGAACTCGAACAAACAATGGTTGC
TATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGTAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.888

100

0.649