Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KIV12_RS10335 Genome accession   NZ_CP075052
Coordinates   2050721..2051056 (-) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain LZP 02     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2045721..2056056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS10285 (KIV12_10285) comGC 2045927..2046220 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  KIV12_RS10290 (KIV12_10290) comGD 2046213..2046659 (+) 447 WP_217966996.1 competence type IV pilus minor pilin ComGD -
  KIV12_RS10295 (KIV12_10295) comGE 2046643..2046957 (+) 315 WP_138278722.1 competence type IV pilus minor pilin ComGE -
  KIV12_RS10300 (KIV12_10300) comGF 2046899..2047396 (+) 498 WP_217966997.1 competence type IV pilus minor pilin ComGF -
  KIV12_RS10305 (KIV12_10305) - 2047393..2047776 (+) 384 WP_217966998.1 competence type IV pilus minor pilin ComGG -
  KIV12_RS10310 (KIV12_10310) - 2047837..2048031 (+) 195 WP_008342191.1 YqzE family protein -
  KIV12_RS10315 (KIV12_10315) - 2048066..2048392 (-) 327 WP_235701742.1 DUF3889 domain-containing protein -
  KIV12_RS10320 (KIV12_10320) tapA 2048645..2049172 (+) 528 WP_058336654.1 amyloid fiber anchoring/assembly protein TapA -
  KIV12_RS10325 (KIV12_10325) sipW 2049222..2049794 (+) 573 WP_058336655.1 signal peptidase I SipW -
  KIV12_RS10330 (KIV12_10330) tasA 2049853..2050653 (+) 801 WP_008342195.1 biofilm matrix protein TasA -
  KIV12_RS10335 (KIV12_10335) sinR 2050721..2051056 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  KIV12_RS10340 (KIV12_10340) - 2051090..2051254 (-) 165 WP_008342197.1 anti-repressor SinI family protein -
  KIV12_RS10345 (KIV12_10345) - 2051439..2052236 (-) 798 WP_017367588.1 YqhG family protein -
  KIV12_RS10350 (KIV12_10350) - 2052251..2053921 (-) 1671 WP_073413952.1 DEAD/DEAH box helicase -
  KIV12_RS10355 (KIV12_10355) gcvT 2054481..2055578 (+) 1098 WP_217966999.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=567409 KIV12_RS10335 WP_017357978.1 2050721..2051056(-) (sinR) [Bacillus altitudinis strain LZP 02]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=567409 KIV12_RS10335 WP_017357978.1 2050721..2051056(-) (sinR) [Bacillus altitudinis strain LZP 02]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928