Detailed information NTG0056739

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: SAFDA_RS08230
• Genome accession: NZ_AP014942
• Coordinates: 1677736..1678422 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain FDA209P
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1672736..1683422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAFDA_RS08190 (SAFDA_1540)	rpmA	1673380..1673664 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SAFDA_RS08195 (SAFDA_1541)	-	1673676..1673996 (-)	321	WP_042727697.1	ribosomal-processing cysteine protease Prp	-
SAFDA_RS08200 (SAFDA_1542)	rplU	1674002..1674310 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
SAFDA_RS08205 (SAFDA_1543)	mreD	1674672..1675202 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
SAFDA_RS08210 (SAFDA_1544)	mreC	1675202..1676044 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
SAFDA_RS08215	-	1676244..1676363 (-)	120	WP_000840601.1	hypothetical protein	-
SAFDA_RS08220 (SAFDA_1545)	-	1676437..1676910 (-)	474	WP_001236734.1	DUF4930 family protein	-
SAFDA_RS14550	-	1677070..1677267 (+)	198	WP_000025835.1	hypothetical protein	-
SAFDA_RS08225 (SAFDA_1546)	-	1677384..1677668 (-)	285	WP_000171859.1	hypothetical protein	-
SAFDA_RS08230 (SAFDA_1547)	ysxA/radC	1677736..1678422 (-)	687	WP_000692886.1	RadC family protein	Machinery gene
SAFDA_RS08235 (SAFDA_1548)	-	1678419..1679126 (-)	708	Protein_1587	prepilin peptidase	-
SAFDA_RS08245 (SAFDA_1549)	-	1679396..1680667 (-)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
SAFDA_RS08250 (SAFDA_1550)	-	1680680..1683310 (-)	2631	WP_042727698.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=56739 SAFDA_RS08230 WP_000692886.1 1677736..1678422(-) (ysxA/radC) [Staphylococcus aureus strain FDA209P]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=56739 SAFDA_RS08230 WP_000692886.1 1677736..1678422(-) (ysxA/radC) [Staphylococcus aureus strain FDA209P]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGCTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATTATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTGTTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377