Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SAFDA_RS08175 Genome accession   NZ_AP014942
Coordinates   1670516..1671118 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain FDA209P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1665516..1676118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS08155 (SAFDA_1533) yajC 1667012..1667272 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SAFDA_RS08160 (SAFDA_1534) tgt 1667291..1668430 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SAFDA_RS08165 (SAFDA_1535) queA 1668453..1669478 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SAFDA_RS08170 (SAFDA_1536) ruvB 1669480..1670484 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SAFDA_RS08175 (SAFDA_1537) ruvA 1670516..1671118 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  SAFDA_RS08180 (SAFDA_1538) - 1671132..1671587 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SAFDA_RS08185 (SAFDA_1539) obgE 1671600..1672892 (-) 1293 WP_000496100.1 GTPase ObgE -
  SAFDA_RS08190 (SAFDA_1540) rpmA 1673380..1673664 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SAFDA_RS08195 (SAFDA_1541) - 1673676..1673996 (-) 321 WP_042727697.1 ribosomal-processing cysteine protease Prp -
  SAFDA_RS08200 (SAFDA_1542) rplU 1674002..1674310 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SAFDA_RS08205 (SAFDA_1543) mreD 1674672..1675202 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  SAFDA_RS08210 (SAFDA_1544) mreC 1675202..1676044 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=56738 SAFDA_RS08175 WP_000271547.1 1670516..1671118(-) (ruvA) [Staphylococcus aureus strain FDA209P]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=56738 SAFDA_RS08175 WP_000271547.1 1670516..1671118(-) (ruvA) [Staphylococcus aureus strain FDA209P]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment