Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MKF35_RS03350 Genome accession   NZ_CP092629
Coordinates   739812..740309 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain HU20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 734812..745309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKF35_RS03330 pchD 735596..737239 (+) 1644 WP_004351774.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  MKF35_RS03335 pchC 737236..737991 (+) 756 WP_003106952.1 pyochelin biosynthesis editing thioesterase PchC -
  MKF35_RS03340 pchB 737991..738296 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  MKF35_RS03345 pchA 738293..739723 (+) 1431 WP_034020634.1 isochorismate synthase PchA -
  MKF35_RS03350 ssb 739812..740309 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  MKF35_RS03355 - 740326..741714 (-) 1389 WP_003103910.1 MFS transporter -
  MKF35_RS03360 uvrA 741928..744765 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  MKF35_RS03365 bfr 744837..745301 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=567186 MKF35_RS03350 WP_003114685.1 739812..740309(-) (ssb) [Pseudomonas aeruginosa strain HU20]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=567186 MKF35_RS03350 WP_003114685.1 739812..740309(-) (ssb) [Pseudomonas aeruginosa strain HU20]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515