Detailed information NTG0056650

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPOK310_RS06440
• Genome accession: NC_020509
• Coordinates: 1323551..1324513 (-)
• Length: 320 a.a.
• NCBI ID: WP_015429415.1
• Uniprot ID: -
• Organism: Helicobacter pylori OK310
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1318551..1329513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOK310_RS06420 (HPOK310_1233)	-	1318859..1319791 (-)	933	WP_015429411.1	GDP-L-fucose synthase family protein	-
HPOK310_RS06425 (HPOK310_1234)	gmd	1319784..1320929 (-)	1146	WP_015429412.1	GDP-mannose 4,6-dehydratase	-
HPOK310_RS06430 (HPOK310_1235)	-	1320943..1322355 (-)	1413	WP_015429413.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOK310_RS06435 (HPOK310_1236)	comB10	1322422..1323558 (-)	1137	WP_015429414.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOK310_RS06440 (HPOK310_1237)	comB9	1323551..1324513 (-)	963	WP_015429415.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOK310_RS06445 (HPOK310_1238)	comB8	1324513..1325256 (-)	744	WP_015429416.1	type IV secretion system protein	Machinery gene
HPOK310_RS08065	comB7	1325253..1325378 (-)	126	WP_075668089.1	comB7 lipoprotein	Machinery gene
HPOK310_RS06450 (HPOK310_1239)	comB6	1325394..1326449 (-)	1056	WP_015429417.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOK310_RS06455 (HPOK310_1240)	-	1326457..1327461 (-)	1005	WP_015429418.1	PDZ domain-containing protein	-
HPOK310_RS06460 (HPOK310_1241)	-	1327461..1327754 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
HPOK310_RS06465 (HPOK310_1242)	panD	1327765..1328115 (-)	351	WP_000142213.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36715.27 Da
• Isoelectric Point: 9.0863

>NTDB_id=56650 HPOK310_RS06440 WP_015429415.1 1323551..1324513(-) (comB9) [Helicobacter pylori OK310]
MRKVLCTLMGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLENAPTNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=56650 HPOK310_RS06440 WP_015429415.1 1323551..1324513(-) (comB9) [Helicobacter pylori OK310]
ATGCGTAAGGTTTTATGCACTCTTATGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACGAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTTGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTATATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.934