Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPOK310_RS06435 Genome accession   NC_020509
Coordinates   1322422..1323558 (-) Length   378 a.a.
NCBI ID   WP_015429414.1    Uniprot ID   -
Organism   Helicobacter pylori OK310     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1317422..1328558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS06415 (HPOK310_1232) hypE 1317572..1318570 (+) 999 WP_015429410.1 hydrogenase expression/formation protein HypE -
  HPOK310_RS06420 (HPOK310_1233) - 1318859..1319791 (-) 933 WP_015429411.1 GDP-L-fucose synthase family protein -
  HPOK310_RS06425 (HPOK310_1234) gmd 1319784..1320929 (-) 1146 WP_015429412.1 GDP-mannose 4,6-dehydratase -
  HPOK310_RS06430 (HPOK310_1235) - 1320943..1322355 (-) 1413 WP_015429413.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPOK310_RS06435 (HPOK310_1236) comB10 1322422..1323558 (-) 1137 WP_015429414.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPOK310_RS06440 (HPOK310_1237) comB9 1323551..1324513 (-) 963 WP_015429415.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPOK310_RS06445 (HPOK310_1238) comB8 1324513..1325256 (-) 744 WP_015429416.1 type IV secretion system protein Machinery gene
  HPOK310_RS08065 comB7 1325253..1325378 (-) 126 WP_075668089.1 comB7 lipoprotein Machinery gene
  HPOK310_RS06450 (HPOK310_1239) comB6 1325394..1326449 (-) 1056 WP_015429417.1 P-type conjugative transfer protein TrbL Machinery gene
  HPOK310_RS06455 (HPOK310_1240) - 1326457..1327461 (-) 1005 WP_015429418.1 PDZ domain-containing protein -
  HPOK310_RS06460 (HPOK310_1241) - 1327461..1327754 (-) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  HPOK310_RS06465 (HPOK310_1242) panD 1327765..1328115 (-) 351 WP_000142213.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42170.79 Da        Isoelectric Point: 9.9924

>NTDB_id=56649 HPOK310_RS06435 WP_015429414.1 1322422..1323558(-) (comB10) [Helicobacter pylori OK310]
MNKWLKGALVFVGGFATIVTISLIYHQKPKVPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDPKTNTTSPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=56649 HPOK310_RS06435 WP_015429414.1 1322422..1323558(-) (comB10) [Helicobacter pylori OK310]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGTCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACTATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTCTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATCCAAAAAC
AAACACAACCTCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGACAAAATGATACCCGCCTTTTTAATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTGATCGCACAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTTGTTAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGCAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCTAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

96.032

100

0.96

Multiple sequence alignment